Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2r6j NDP Eugenol synthase 1 1.1.1.318

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2r6j NDPEugenol synthase 1 1.1.1.318 1.253
2qw8 NAPEugenol synthase 1 1.1.1.318 1.248
2qx7 NAPEugenol synthase 1 1.1.1.318 1.180
3c3x NAPEugenol synthase 1 1.1.1.318 1.107
3c1o NAPEugenol synthase / 0.783
2c29 NAPDihydroflavonol 4-reductase / 0.753
2nnl NAPDihydroflavonol 4-reductase 1.1.1.219 0.750
2yjz NAPMetalloreductase STEAP4 1.16.1 0.741
4b4o NDPEpimerase family protein SDR39U1 / 0.689
3i6q NDPPutative leucoanthocyanidin reductase 1 / 0.684
1lua NAPBifunctional protein MdtA 1.5.1.5 0.676
4xgi NADGlutamate dehydrogenase / 0.675
2zat NAPDehydrogenase/reductase SDR family member 4 1.1.1.184 0.667
1hsz NADAlcohol dehydrogenase 1B 1.1.1.1 0.658
3bmo NAPPteridine reductase / 0.657
5aq1 NDPGlucose-6-phosphate 1-dehydrogenase / 0.655
3p19 NDPPutative blue fluorescent protein / 0.653
2f1k NAPPrephenate dehydrogenase / 0.652
3pzr NAPAspartate-semialdehyde dehydrogenase 1 / 0.650