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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2r43 G3G Gag-Pol polyprotein 3.4.23.16

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2r43 G3GGag-Pol polyprotein 3.4.23.16 1.357
2pwc G3GGag-Pol polyprotein 3.4.23.16 1.250
2r3t G4GGag-Pol polyprotein 3.4.23.16 1.148
2pqz G0GGag-Pol polyprotein 3.4.23.16 1.119
2qnp QN2Gag-Pol polyprotein 3.4.23.16 1.119
2pwr G4GGag-Pol polyprotein 3.4.23.16 1.110
2r3w G3GGag-Pol polyprotein 3.4.23.16 1.071
2qnn QN1Gag-Pol polyprotein 3.4.23.16 1.056
2qnq QN3Gag-Pol polyprotein 3.4.23.16 1.036
2r38 G4GGag-Pol polyprotein 3.4.23.16 0.996
3qro NK9Gag-Pol polyprotein 3.4.23.16 0.931
3qpj N4IGag-Pol polyprotein 3.4.23.16 0.913
3qrs NK8Gag-Pol polyprotein 3.4.23.16 0.876
3ckt YDPGag-Pol polyprotein 3.4.23.16 0.871
3qbf JHGGag-Pol polyprotein 3.4.23.16 0.852
1zsf 0ZSGag-Pol polyprotein 3.4.23.16 0.787
3qih NI7Gag-Pol polyprotein 3.4.23.16 0.782
3qrm NK7Gag-Pol polyprotein 3.4.23.16 0.775
1odx 0E8Gag-Pol polyprotein 3.4.23.16 0.740
3bhe BZNGag-Pol polyprotein 3.4.23.16 0.734
3bgb LJGGag-Pol polyprotein 3.4.23.16 0.728
1zsr 0ZTGag-Pol polyprotein 3.4.23.16 0.723
1ebz BECGag-Pol polyprotein 3.4.23.16 0.717
1ec0 BEDGag-Pol polyprotein 3.4.23.16 0.714
1d4h BEHGag-Pol polyprotein 3.4.23.16 0.713
1b6p PI7Gag-Pol polyprotein 3.4.23.16 0.711
1d4j MSCGag-Pol polyprotein 3.4.23.16 0.710
3d20 017Gag-Pol polyprotein 3.4.23.16 0.706
1w5x BE5Gag-Pol polyprotein 3.4.23.16 0.699
1eby BEBGag-Pol polyprotein 3.4.23.16 0.698
3nu9 478Gag-Pol polyprotein 3.4.23.16 0.686
3nuj 478Gag-Pol polyprotein 3.4.23.16 0.686
3sab F78Protease / 0.686
1ec1 BEEGag-Pol polyprotein 3.4.23.16 0.685
1wbm BLLPol protein / 0.683
3ekv 478Gag-Pol polyprotein 3.4.23.16 0.682
2f80 017Gag-Pol polyprotein 3.4.23.16 0.680
3gi4 K60Gag-Pol polyprotein / 0.680
1w5v BE3Gag-Pol polyprotein 3.4.23.16 0.679
4dqe 017Gag-Pol polyprotein / 0.678
3nwq 2NCGag-Pol polyprotein 3.4.23.16 0.675
1ebw BEIGag-Pol polyprotein 3.4.23.16 0.673
3el0 1UNGag-Pol polyprotein 3.4.23.16 0.673
3nu4 478Gag-Pol polyprotein 3.4.23.16 0.670
1mrw K57Gag-Pol polyprotein 3.4.23.16 0.669
2i4v DJRV-1 protease / 0.668
3lzv 017Gag-Pol polyprotein 3.4.23.16 0.668
3oxv 478Gag-Pol polyprotein 3.4.23.16 0.667
1mer DMQGag-Pol polyprotein 3.4.23.16 0.664
1msn JE2Gag-Pol polyprotein 3.4.23.16 0.663
1npv L27Gag-Pol polyprotein 3.4.23.16 0.663
1xl5 190Gag-Pol polyprotein 3.4.23.16 0.663
2f81 017Gag-Pol polyprotein 3.4.23.16 0.662
3gga GGWGag-Pol polyprotein / 0.662
1z1r HBHGag-Pol polyprotein 3.4.23.16 0.660
3jw2 017Gag-Pol polyprotein 3.4.23.16 0.659
2bbb HH1Gag-Pol polyprotein 3.4.23.16 0.657
1d4i BEGGag-Pol polyprotein 3.4.23.16 0.656
1d4k PI8Gag-Pol polyprotein 3.4.23.16 0.655
1m0b 0ZQGag-Pol polyprotein 3.4.23.16 0.655
2qi7 MZ9Gag-Pol polyprotein / 0.655
1d4l PI9Gag-Pol polyprotein 3.4.23.16 0.654
2i0d MUTProtease / 0.654
1fej 2NCGag-Pol polyprotein 3.4.23.16 0.653
2qi3 MZ5Gag-Pol polyprotein / 0.653
4hdp G52Gag-Pol polyprotein 3.4.23.16 0.653
3oxx DR7Gag-Pol polyprotein 3.4.23.16 0.652
2hs2 017Protease / 0.651
3ekx 1UNGag-Pol polyprotein 3.4.23.16 0.651
3kfn 3TLGag-Pol polyprotein / 0.651