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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2r3p 3SC Cyclin-dependent kinase 2 2.7.11.22

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2r3p 3SCCyclin-dependent kinase 2 2.7.11.22 0.879
2r3q 5SCCyclin-dependent kinase 2 2.7.11.22 0.752
2r3i SCFCyclin-dependent kinase 2 2.7.11.22 0.746
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
2r3j SCJCyclin-dependent kinase 2 2.7.11.22 0.736
2r3l SCWCyclin-dependent kinase 2 2.7.11.22 0.721
2r3k SCQCyclin-dependent kinase 2 2.7.11.22 0.693
2b54 D05Cyclin-dependent kinase 2 2.7.11.22 0.689
2c68 CT6Cyclin-dependent kinase 2 2.7.11.22 0.689
2r3r 6SCCyclin-dependent kinase 2 2.7.11.22 0.682
4kd1 1QKCyclin-dependent kinase 2 2.7.11.22 0.677
1ckp PVBCyclin-dependent kinase 2 2.7.11.22 0.670
2r3m SCXCyclin-dependent kinase 2 2.7.11.22 0.668
1w0x OLOCyclin-dependent kinase 2 2.7.11.22 0.665
2vti LZ3Cyclin-dependent kinase 2 2.7.11.22 0.656
2a0c CK9Cyclin-dependent kinase 2 2.7.11.22 0.653
3ezr EZRCyclin-dependent kinase 2 2.7.11.22 0.653
3ezv EZVCyclin-dependent kinase 2 2.7.11.22 0.652