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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2qwq ADP Heat shock cognate 71 kDa protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2qwq ADPHeat shock cognate 71 kDa protein / 0.873
1ngd ADPHeat shock cognate 71 kDa protein / 0.836
2qwr ANPHeat shock cognate 71 kDa protein / 0.835
1ngb ADPHeat shock cognate 71 kDa protein / 0.819
1ngc ADPHeat shock cognate 71 kDa protein / 0.818
2qwn ADPHeat shock cognate 71 kDa protein / 0.818
2qwl ADPHeat shock cognate 71 kDa protein / 0.806
1ngh ATPHeat shock cognate 71 kDa protein / 0.787
1atr ADPHeat shock cognate 71 kDa protein / 0.786
1ats ADPHeat shock cognate 71 kDa protein / 0.784
3hsc ADPHeat shock cognate 71 kDa protein / 0.784
3ldo ANP78 kDa glucose-regulated protein / 0.777
5f1x ATP78 kDa glucose-regulated protein / 0.769
1ngj ANPHeat shock cognate 71 kDa protein / 0.765
3fe1 ADPHeat shock 70 kDa protein 6 / 0.761
1ngi ANPHeat shock cognate 71 kDa protein / 0.752
5f2r ACP78 kDa glucose-regulated protein / 0.752
4h5t ADPHeat shock cognate 71 kDa protein / 0.740
3ldl ATP78 kDa glucose-regulated protein / 0.735
1nge ATPHeat shock cognate 71 kDa protein / 0.723
4b9q ATPChaperone protein DnaK / 0.693
1kxp ATPActin, alpha skeletal muscle / 0.673
2v51 ATPActin, alpha skeletal muscle / 0.660
1wua ATPActin, alpha skeletal muscle / 0.658
1nlv ATPMajor actin / 0.656