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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2qw8 NAP Eugenol synthase 1 1.1.1.318

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2qw8 NAPEugenol synthase 1 1.1.1.318 1.253
2r6j NDPEugenol synthase 1 1.1.1.318 1.248
2qx7 NAPEugenol synthase 1 1.1.1.318 1.180
3c3x NAPEugenol synthase 1 1.1.1.318 1.106
3c1o NAPEugenol synthase / 0.828
2yjz NAPMetalloreductase STEAP4 1.16.1 0.772
2nnl NAPDihydroflavonol 4-reductase 1.1.1.219 0.755
2c29 NAPDihydroflavonol 4-reductase / 0.754
5aq1 NDPGlucose-6-phosphate 1-dehydrogenase / 0.694
3i6q NDPPutative leucoanthocyanidin reductase 1 / 0.684
4b4o NDPEpimerase family protein SDR39U1 / 0.684
4xgi NADGlutamate dehydrogenase / 0.676
1lua NAPBifunctional protein MdtA 1.5.1.5 0.674
3bmo NAPPteridine reductase / 0.674
2zat NAPDehydrogenase/reductase SDR family member 4 1.1.1.184 0.667
2f1k NAPPrephenate dehydrogenase / 0.666
4fc7 NAPPeroxisomal 2,4-dienoyl-CoA reductase 1.3.1.34 0.666
5a05 NDPGlucose-fructose oxidoreductase / 0.660
2ggs NDPdTDP-4-dehydrorhamnose reductase / 0.658
4clo NAPPteridine reductase / 0.657
1gwj FMNMorphinone reductase / 0.655
3p19 NDPPutative blue fluorescent protein / 0.655
2bfo NDPPteridine reductase 1 1.5.1.33 0.654
3h4v NAPPteridine reductase 1 1.5.1.33 0.651