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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2qjo NAD Bifunctional NMN adenylyltransferase/Nudix hydrolase 2.7.7.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2qjo NADBifunctional NMN adenylyltransferase/Nudix hydrolase 2.7.7.1 1.274
1m8g NADNicotinamide-nucleotide adenylyltransferase 2.7.7.1 0.719
1ej2 NADNicotinamide-nucleotide adenylyltransferase 2.7.7.1 0.716
4yp5 NAPNicotinamide-nucleotide adenylyltransferase 2.7.7.1 0.713
4yp7 NAPNicotinamide-nucleotide adenylyltransferase 2.7.7.1 0.710
1m8j NADNicotinamide-nucleotide adenylyltransferase 2.7.7.1 0.702
3coy 53HPantothenate synthetase 6.3.2.1 0.702
4yp6 NAPNicotinamide-nucleotide adenylyltransferase 2.7.7.1 0.697
1m8k NADNicotinamide-nucleotide adenylyltransferase 2.7.7.1 0.686
3coz 54HPantothenate synthetase 6.3.2.1 0.653
1k4m NADNicotinate-nucleotide adenylyltransferase 2.7.7.18 0.650