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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2qfo A13 Heat shock protein HSP 90-alpha

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2qfo A13Heat shock protein HSP 90-alpha / 0.863
2qg0 A94Heat shock protein HSP 90-alpha / 0.747
4e5i 0N9Polymerase acidic protein / 0.744
3omu IBDHeat shock protein 83 / 0.706
3r4n FU5Heat shock protein HSP 90-alpha / 0.696
2wi7 2KLHeat shock protein HSP 90-alpha / 0.689
3vha VHAHeat shock protein HSP 90-alpha / 0.688
3rlp 3RPHeat shock protein HSP 90-alpha / 0.686
3b28 B2XHeat shock protein HSP 90-alpha / 0.685
3rlq 3RQHeat shock protein HSP 90-alpha / 0.675
3rlr 3RRHeat shock protein HSP 90-alpha / 0.667
3ft5 MO8Heat shock protein HSP 90-alpha / 0.666
2wi2 ZZ3Heat shock protein HSP 90-alpha / 0.665
2yej ZZ3Heat shock protein HSP 90-alpha / 0.661
4e5f 0N7Polymerase acidic protein / 0.660
3wha WHAHeat shock protein HSP 90-alpha / 0.659
2xhr C0PHeat shock protein HSP 90-alpha / 0.658
4jql VJ6Heat shock protein HSP 90-alpha / 0.658
3c11 GDMATP-dependent molecular chaperone HSP82 / 0.653
2cgw 3C3Serine/threonine-protein kinase Chk1 2.7.11.1 0.652
2z7q ACPRibosomal protein S6 kinase alpha-1 2.7.11.1 0.651