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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2q9c GNP Signal recognition particle receptor FtsY

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2q9c GNPSignal recognition particle receptor FtsY / 0.958
5l3r GCPCell division protein FtsY homolog, chloroplastic / 0.748
1z2a GDPRas-related protein Rab-23 / 0.720
5l3s GNPSignal recognition particle receptor FtsY / 0.710
1ibr GNPGTP-binding nuclear protein Ran / 0.703
1okk GCPSignal recognition particle protein / 0.693
1okk GCPSignal recognition particle receptor FtsY / 0.693
1zd9 GDPADP-ribosylation factor-like protein 8A / 0.693
5dif GNPGTP-binding nuclear protein Ran / 0.692
1rj9 GCPSignal recognition particle receptor FtsY / 0.691
2j7p GNPSignal recognition particle protein / 0.690
2j7p GNPSignal recognition particle receptor FtsY / 0.690
1gil GSPGuanine nucleotide-binding protein G(i) subunit alpha-1 / 0.681
3ea5 GDPGTP-binding nuclear protein Ran / 0.681
2q3f GNPRas-related GTP-binding protein D / 0.680
3vhx GTPADP-ribosylation factor 6 / 0.672
3c14 GSPGuanine nucleotide-binding protein G(s) subunit alpha isoforms short / 0.671
1zcb GDPGuanine nucleotide-binding protein subunit alpha-13 / 0.667
2ic5 GNPRas-related C3 botulinum toxin substrate 3 / 0.667
4uj5 GNPRas-related protein Rab-11A / 0.667
3b1x GNPFerrous iron transport protein B / 0.666
3a58 GNPGTP-binding protein RHO1 / 0.664
3e5h GNPRas-related protein Rab-28 / 0.664
4rkf GNPRas-related protein Rab-3 / 0.664
1azt GSPGuanine nucleotide-binding protein G(s) subunit alpha isoforms short / 0.663
1cul GSPGuanine nucleotide-binding protein G(s) subunit alpha isoforms short / 0.663
2hf8 GSPProbable hydrogenase nickel incorporation protein HypB / 0.662
1gia GSPGuanine nucleotide-binding protein G(i) subunit alpha-1 / 0.661
3law GNPRas-related protein Rab-7a / 0.660
3rab GNPRas-related protein Rab-3A / 0.660
3k9l GNPGTPase HRas / 0.659
4nyj GNPGTPase HRas / 0.659
3bos CDPRegulatory inactivation of DnaA Hda protein / 0.658
3tnf GNPRas-related protein Rab-8A / 0.658
2bc9 GNPGuanylate-binding protein 1 / 0.654
2j5x GSPADP-ribosylation factor 6 / 0.654
3bc1 GNPRas-related protein Rab-27A / 0.654
4dlz GNPGTPase HRas / 0.654
1zc3 GNPRas-related protein Ral-A / 0.653
2aky AP5Adenylate kinase / 0.653
1uad GNPRas-related protein Ral-A / 0.652
4lhw GNPRas-related protein Rab-8A / 0.652
5d3q GDPDynamin-1 3.6.5.5 0.652
1n6l GTPRas-related protein Rab-5A / 0.651
2fna ADPUncharacterized protein / 0.651
3rsl GNPGTPase HRas / 0.651
2g0n GDPRas-related C3 botulinum toxin substrate 3 / 0.650
3k8y GNPGTPase HRas / 0.650
3ref GDPRho family GTPase / 0.650