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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2q97 ATP Actin, alpha skeletal muscle

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2q97 ATPActin, alpha skeletal muscle / 1.102
4pkg ATPActin, alpha skeletal muscle / 1.046
4pl8 ATPActin, alpha skeletal muscle / 1.036
4k41 ATPActin, alpha skeletal muscle / 1.032
1s22 ATPActin, alpha skeletal muscle / 1.031
4pki ATPActin, alpha skeletal muscle / 1.030
1t44 ATPActin, alpha skeletal muscle / 1.017
3eku ATPActin-5C / 1.017
1qz5 ATPActin, alpha skeletal muscle / 1.016
1wua ATPActin, alpha skeletal muscle / 1.011
3daw ATPActin, alpha skeletal muscle / 1.000
2q36 ATPActin, alpha skeletal muscle / 0.999
3m6g ATPActin, alpha skeletal muscle / 0.999
3mn7 ATPActin-5C / 0.996
5ce3 ATPActin / 0.995
3a5o ATPMajor actin / 0.994
3w3d ATPActin, gamma-enteric smooth muscle / 0.985
2v51 ATPActin, alpha skeletal muscle / 0.984
3eks ATPActin-5C / 0.982
3m1f ATPActin, alpha skeletal muscle / 0.982
2a41 ATPActin, alpha skeletal muscle / 0.979
1dej ATPMajor actin / 0.978
1c0f ATPMajor actin / 0.977
3mn9 ATPActin-5C / 0.975
1eqy ATPActin, alpha skeletal muscle / 0.972
3mn6 ATPActin-5C / 0.961
4cbx ATPActin-2 / 0.958
3chw ATPMajor actin / 0.957
1rgi ATPActin, alpha skeletal muscle / 0.950
3ffk ATPActin, alpha skeletal muscle / 0.948
3el2 ATPActin-5C / 0.944
4b1v ATPActin, alpha skeletal muscle / 0.944
1mdu ATPActin, alpha skeletal muscle / 0.928
1kxp ATPActin, alpha skeletal muscle / 0.924
2oan ATPActin, cytoplasmic 1 / 0.920
3tu5 ATPActin, alpha skeletal muscle / 0.914
1atn ATPActin, alpha skeletal muscle / 0.904
1nlv ATPMajor actin / 0.899
4m63 ATPActin-5C / 0.888
4pkh ADPActin, alpha skeletal muscle / 0.887
2p9k ATPActin-related protein 2 / 0.886
1lot ATPActin, alpha skeletal muscle / 0.871
1h1v ATPActin, alpha skeletal muscle / 0.865
1ijj ATPActin, alpha skeletal muscle / 0.852
4ci6 ATPActin / 0.848
3wt0 ATPCell division protein FtsA / 0.839
4k42 ADPActin, alpha skeletal muscle / 0.814
3a5m ATPMajor actin / 0.798
1yxq ATPActin, alpha skeletal muscle / 0.781
1nmd ATPMajor actin / 0.772
4b9q ATPChaperone protein DnaK / 0.766
1nm1 ATPMajor actin / 0.750
4jhd ANPActin-5C / 0.742
4eht ADP2-hydroxyisocaproyl-CoA dehydratase activator / 0.735
4ehu ANP2-hydroxyisocaproyl-CoA dehydratase activator / 0.732
4a61 ANPPlasmid segregation protein ParM / 0.725
2e2q ADPATP-dependent hexokinase / 0.720
1rfq ATPActin, alpha skeletal muscle / 0.719
4a62 ANPPlasmid segregation protein ParM / 0.715
2fsn ADPArchaeal actin homolog / 0.714
4k43 ADPActin, alpha skeletal muscle / 0.714
3d2e ATPHeat shock protein homolog SSE1 / 0.713
2zgz GNPPlasmid segregation protein ParM / 0.708
3wqt ANPCell division protein FtsA / 0.701
4brd ANPEctonucleoside triphosphate diphosphohydrolase I / 0.681
2d0o ADPDiol dehydratase-reactivating factor alpha subunit / 0.679
3ule ATPActin-related protein 2 / 0.677
3u4l ATPActin, cytoplasmic 1 / 0.668
3ldl ATP78 kDa glucose-regulated protein / 0.666
4brg GNPEctonucleoside triphosphate diphosphohydrolase I / 0.662
5f1x ATP78 kDa glucose-regulated protein / 0.662
3ldo ANP78 kDa glucose-regulated protein / 0.660
1ngd ADPHeat shock cognate 71 kDa protein / 0.658
3ryh GTPTubulin alpha chain / 0.653