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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2pog WST Estrogen receptor

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2pog WSTEstrogen receptor / 1.116
2q70 DC8Estrogen receptor / 0.935
3q95 ESLEstrogen receptor / 0.834
2p15 EZTEstrogen receptor / 0.826
2qgt EEDEstrogen receptor / 0.777
3l03 4OHEstrogen receptor / 0.759
2ayr L4GEstrogen receptor / 0.747
3uud ESTEstrogen receptor / 0.747
2j7x ESTEstrogen receptor beta / 0.746
5dx3 ESTEstrogen receptor / 0.742
5dxg ESTEstrogen receptor / 0.741
4pxm ESTEstrogen receptor / 0.713
2yat EEUEstrogen receptor / 0.705
5hyr ESTEstrogen receptor / 0.701
2yja ESTEstrogen receptor / 0.697
1x76 697Estrogen receptor beta / 0.690
1gwr ESTEstrogen receptor / 0.679
2jfa RALEstrogen receptor / 0.678
3ols ESTEstrogen receptor beta / 0.662
4e5f 0N7Polymerase acidic protein / 0.660
4e5i 0N9Polymerase acidic protein / 0.660
2qe4 JJ3Estrogen receptor / 0.658
4iv2 1GREstrogen receptor / 0.652
1uom PTIEstrogen receptor / 0.650