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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2pkk 2FA Adenosine kinase 2.7.1.20

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2pkk 2FAAdenosine kinase 2.7.1.20 1.141
4ube 2FAAdenosine kinase 2.7.1.20 1.110
2pkm ADNAdenosine kinase 2.7.1.20 1.046
3b1p NOSPfkB carbohydrate kinase family protein / 0.754
3vaq ADNPutative adenosine kinase / 0.726
2a9y 26AAdenosine kinase 2.7.1.20 0.725
4o8j ADNRNA 3'-terminal phosphate cyclase 6.5.1.4 0.698
1ao0 ADPAmidophosphoribosyltransferase / 0.695
5ccx SAHtRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A 2.1.1.220 0.692
1v1a KDG2-dehydro-3-deoxygluconokinase 2.7.1.45 0.687
2ql6 TIZNicotinamide riboside kinase 1 / 0.675
3uq9 TBNPutative adenosine kinase / 0.675
2gl0 ADNUncharacterized protein / 0.670
1yf3 SAHDNA adenine methylase / 0.669
3vas ADNPutative adenosine kinase / 0.669
1nc1 MTH5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 3.2.2.9 0.664
4rtr SAMDNA adenine methylase 2.1.1.72 0.663
1nm5 NAPNAD(P) transhydrogenase subunit beta 1.6.1.2 0.661
3h0r ATPAspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B 6.3.5 0.660
4dc3 2FAPutative adenosine kinase / 0.658
1uay ADNOxidoreductase / 0.657
4nwi CTN7-methylguanosine phosphate-specific 5'-nucleotidase / 0.657
5ccb SAHtRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A 2.1.1.220 0.656
5je2 SAHMethyl transferase / 0.656
3ou2 SAHSAM-dependent methyltransferase / 0.654
3ou7 SAMSAM-dependent methyltransferase / 0.652
1bc5 SAHChemotaxis protein methyltransferase 2.1.1.80 0.650