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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2paa ATP Phosphoglycerate kinase 2 2.7.2.3

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2paa ATPPhosphoglycerate kinase 2 2.7.2.3 1.000
3c3c CDPPhosphoglycerate kinase 1 2.7.2.3 0.725
1kf0 ACPPhosphoglycerate kinase 1 2.7.2.3 0.716
2zgv ADPPhosphoglycerate kinase 1 2.7.2.3 0.694
2xe7 ADPPhosphoglycerate kinase 1 2.7.2.3 0.680
2wzb ADPPhosphoglycerate kinase 1 2.7.2.3 0.677
1php ADPPhosphoglycerate kinase 2.7.2.3 0.673