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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2p9k ATP Actin-related protein 2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2p9k ATPActin-related protein 2 / 1.133
1nlv ATPMajor actin / 0.968
1qz5 ATPActin, alpha skeletal muscle / 0.958
1c0f ATPMajor actin / 0.955
3a5o ATPMajor actin / 0.953
1s22 ATPActin, alpha skeletal muscle / 0.942
3m6g ATPActin, alpha skeletal muscle / 0.939
2a41 ATPActin, alpha skeletal muscle / 0.935
2v51 ATPActin, alpha skeletal muscle / 0.930
4k41 ATPActin, alpha skeletal muscle / 0.929
1t44 ATPActin, alpha skeletal muscle / 0.927
1wua ATPActin, alpha skeletal muscle / 0.923
3eks ATPActin-5C / 0.923
3eku ATPActin-5C / 0.921
3w3d ATPActin, gamma-enteric smooth muscle / 0.918
4cbx ATPActin-2 / 0.918
4pkg ATPActin, alpha skeletal muscle / 0.918
1dej ATPMajor actin / 0.911
3chw ATPMajor actin / 0.909
3mn9 ATPActin-5C / 0.901
3mn6 ATPActin-5C / 0.897
2q36 ATPActin, alpha skeletal muscle / 0.891
3m1f ATPActin, alpha skeletal muscle / 0.891
5ce3 ATPActin / 0.889
1kxp ATPActin, alpha skeletal muscle / 0.888
4ci6 ATPActin / 0.888
3mn7 ATPActin-5C / 0.887
2q97 ATPActin, alpha skeletal muscle / 0.886
3daw ATPActin, alpha skeletal muscle / 0.881
4b1v ATPActin, alpha skeletal muscle / 0.880
4pki ATPActin, alpha skeletal muscle / 0.875
4pl8 ATPActin, alpha skeletal muscle / 0.871
3ffk ATPActin, alpha skeletal muscle / 0.866
4pkh ADPActin, alpha skeletal muscle / 0.865
4m63 ATPActin-5C / 0.852
3el2 ATPActin-5C / 0.846
3ule ATPActin-related protein 2 / 0.845
1eqy ATPActin, alpha skeletal muscle / 0.833
1mdu ATPActin, alpha skeletal muscle / 0.825
3wt0 ATPCell division protein FtsA / 0.823
1lot ATPActin, alpha skeletal muscle / 0.809
4k42 ADPActin, alpha skeletal muscle / 0.809
1nm1 ATPMajor actin / 0.799
3d2e ATPHeat shock protein homolog SSE1 / 0.796
1ijj ATPActin, alpha skeletal muscle / 0.795
3tu5 ATPActin, alpha skeletal muscle / 0.794
2oan ATPActin, cytoplasmic 1 / 0.793
1atn ATPActin, alpha skeletal muscle / 0.782
3a5m ATPMajor actin / 0.775
4b9q ATPChaperone protein DnaK / 0.748
4a62 ANPPlasmid segregation protein ParM / 0.747
1nmd ATPMajor actin / 0.739
2fsn ADPArchaeal actin homolog / 0.739
1rfq ATPActin, alpha skeletal muscle / 0.736
1yxq ATPActin, alpha skeletal muscle / 0.730
1h1v ATPActin, alpha skeletal muscle / 0.707
3ub5 ATPActin, cytoplasmic 1 / 0.696
3wqt ANPCell division protein FtsA / 0.691
2qwl ADPHeat shock cognate 71 kDa protein / 0.689
4brg GNPEctonucleoside triphosphate diphosphohydrolase I / 0.682
2d0o ADPDiol dehydratase-reactivating factor alpha subunit / 0.681
5f1x ATP78 kDa glucose-regulated protein / 0.680
3ldo ANP78 kDa glucose-regulated protein / 0.677
2zgz GNPPlasmid segregation protein ParM / 0.674
4a61 ANPPlasmid segregation protein ParM / 0.674
4ehu ANP2-hydroxyisocaproyl-CoA dehydratase activator / 0.672
1rgi ATPActin, alpha skeletal muscle / 0.670
1ngd ADPHeat shock cognate 71 kDa protein / 0.669
3u4l ATPActin, cytoplasmic 1 / 0.666
4jhd ANPActin-5C / 0.666
4eht ADP2-hydroxyisocaproyl-CoA dehydratase activator / 0.662
1rqj IPEFarnesyl diphosphate synthase 2.5.1.10 0.660
2qwn ADPHeat shock cognate 71 kDa protein / 0.660
4xw5 ATPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.658
5bsm ATP4-coumarate--CoA ligase 2 6.2.1.12 0.658
3x2w ATPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.656
1i7l ATPSynapsin-2 / 0.653
1mwm ADPPlasmid segregation protein ParM / 0.653
2w2x GSPRas-related C3 botulinum toxin substrate 2 / 0.653
1nly AGSCag alpha / 0.651