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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2p9d SAH Diphthine synthase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2p9d SAHDiphthine synthase / 1.108
2ek7 SAHDiphthine synthase / 1.103
2p6l SAHDiphthine synthase / 1.103
2eni SAHDiphthine synthase / 1.102
2p6k SAHDiphthine synthase / 1.102
2pcm SAHDiphthine synthase / 1.102
2ele SAHDiphthine synthase / 1.101
2pb5 SAHDiphthine synthase / 1.101
2dxx SAHDiphthine synthase / 1.100
2e4n SAHDiphthine synthase / 1.100
2ek3 SAHDiphthine synthase / 1.099
2el3 SAHDiphthine synthase / 1.099
2e8r SAHDiphthine synthase / 1.098
2eh5 SAHDiphthine synthase / 1.097
2eh4 SAHDiphthine synthase / 1.096
2en5 SAHDiphthine synthase / 1.096
2pb6 SAHDiphthine synthase / 1.096
2pcg SAHDiphthine synthase / 1.096
2pck SAHDiphthine synthase / 1.096
2ek4 SAHDiphthine synthase / 1.095
2emr SAHDiphthine synthase / 1.095
2e8s SAHDiphthine synthase / 1.094
2eka SAHDiphthine synthase / 1.094
2p6d SAHDiphthine synthase / 1.092
2e08 SAHDiphthine synthase / 1.084
2owk SAHDiphthine synthase / 1.084
2p6i SAHDiphthine synthase / 1.084
2dxw SAHDiphthine synthase / 1.081
2eh2 SAHDiphthine synthase / 1.080
2p5f SAHDiphthine synthase / 1.080
2e17 SAHDiphthine synthase / 1.079
2pca SAHDiphthine synthase / 1.078
2ed5 SAHDiphthine synthase / 1.077
2dv3 SAHDiphthine synthase / 1.076
2eld SAHDiphthine synthase / 1.076
2ek2 SAHDiphthine synthase / 1.074
2owg SAHDiphthine synthase / 1.073
2ejj SAHDiphthine synthase / 1.065
2dek SAHDiphthine synthase / 1.064
2dxv SAHDiphthine synthase / 1.063
2e07 SAHDiphthine synthase / 1.063
2e16 SAHDiphthine synthase / 1.063
2e7r SAHDiphthine synthase / 1.063
2ehl SAHDiphthine synthase / 1.063
2z6r SAHDiphthine synthase / 1.063
2egb SAHDiphthine synthase / 1.062
2egl SAHDiphthine synthase / 1.062
2dv5 SAHDiphthine synthase / 1.061
2owu SAHDiphthine synthase / 1.061
2dsg SAHDiphthine synthase / 1.060
2dsh SAHDiphthine synthase / 1.060
2dv7 SAHDiphthine synthase / 1.060
2e15 SAHDiphthine synthase / 1.060
2e8h SAHDiphthine synthase / 1.060
2eeq SAHDiphthine synthase / 1.058
2egs SAHDiphthine synthase / 1.058
2pch SAHDiphthine synthase / 1.058
2el0 SAHDiphthine synthase / 1.056
2pci SAHDiphthine synthase / 1.055
1wng SAHDiphthine synthase / 1.054
2huv SAHDiphthine synthase / 1.054
2emu SAHDiphthine synthase / 1.049
2ejk SAHDiphthine synthase / 1.047
2e8q SAHDiphthine synthase / 1.045
2pb4 SAHDiphthine synthase / 1.044
2p5c SAHDiphthine synthase / 1.040
2huq SAHDiphthine synthase / 1.039
2owv SAHDiphthine synthase / 1.036
2dv4 SAHDiphthine synthase / 1.035
2dsi SAHDiphthine synthase / 1.026
2p2x SAHDiphthine synthase / 1.026
2hut SAHDiphthine synthase / 1.023
1vce SAHDiphthine synthase / 1.022
2hux SAHDiphthine synthase / 0.946
2hr8 SAHDiphthine synthase / 0.899
2ejz SAHDiphthine synthase / 0.743
2owf SAHDiphthine synthase / 0.743
2ed3 SAHDiphthine synthase / 0.728
4l2i FADElectron transfer flavoprotein alpha/beta-subunit / 0.722
2zvc SAHPrecorrin-3 C17-methyltransferase / 0.692
1cbf SAHCobalt-precorrin-4 C(11)-methyltransferase 2.1.1.271 0.690
1jgt APCCarboxyethyl-arginine beta-lactam-synthase 6.3.3.4 0.685
3s3t ATPUniversal stress protein / 0.683
2hma SAMtRNA-specific 2-thiouridylase MnmA / 0.680
2e0n SAHPrecorrin-2 C20-methyltransferase / 0.679
3ndc SAHPrecorrin-4 C(11)-methyltransferase 2.1.1.133 0.676
1s4d SAHUroporphyrinogen-III C-methyltransferase 2.1.1.107 0.672
2qbu SAHPrecorrin-2 methyltransferase / 0.671
4ii5 ADPCyclin-dependent kinase 2 2.7.11.22 0.666
5a7y SAHtRNA (adenine(9)-N1)-methyltransferase 2.1.1.218 0.665
4oa9 ANPProtein BRASSINOSTEROID INSENSITIVE 1 2.7.10.1 0.664
2zvb SAHPrecorrin-3 C17-methyltransferase / 0.661
3nut SAHPrecorrin-3 methylase / 0.661
1jbp ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.650