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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2ow2 8MR Matrix metalloproteinase-9 3.4.24.35

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2ow2 8MRMatrix metalloproteinase-9 3.4.24.35 0.858
1g05 BBHStromelysin-1 3.4.24.17 0.730
3oho Z79Stromelysin-1 3.4.24.17 0.708
2ow1 7MRMatrix metalloproteinase-9 3.4.24.35 0.695
2ovx 4MRMatrix metalloproteinase-9 3.4.24.35 0.678
1d7x SPCStromelysin-1 3.4.24.17 0.676
1d8f SPIStromelysin-1 3.4.24.17 0.667
1efz PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.660
1m3q ANGN-glycosylase/DNA lyase 3.2.2 0.660
2puc GUNHTH-type transcriptional repressor PurR / 0.660
4ek9 EP4Histone-lysine N-methyltransferase, H3 lysine-79 specific 2.1.1.43 0.660