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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2ow1 7MR Matrix metalloproteinase-9 3.4.24.35

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2ow1 7MRMatrix metalloproteinase-9 3.4.24.35 1.067
3kry 3KRCollagenase 3 3.4.24 0.829
1d8m BBHStromelysin-1 3.4.24.17 0.822
4g9l NGHStromelysin-1 3.4.24.17 0.799
1g49 111Stromelysin-1 3.4.24.17 0.783
1d8f SPIStromelysin-1 3.4.24.17 0.782
4dpe NGHStromelysin-1 3.4.24.17 0.781
2i47 KGYDisintegrin and metalloproteinase domain-containing protein 17 3.4.24.86 0.748
3oho Z79Stromelysin-1 3.4.24.17 0.744
2d1o FA4Stromelysin-1 3.4.24.17 0.739
1d7x SPCStromelysin-1 3.4.24.17 0.729
2yig 5ELCollagenase 3 3.4.24 0.723
2ovx 4MRMatrix metalloproteinase-9 3.4.24.35 0.722
1hy7 MBSStromelysin-1 3.4.24.17 0.718
2w0d CGSMacrophage metalloelastase 3.4.24.65 0.718
1d5j MM3Stromelysin-1 3.4.24.17 0.710
1you PFDCollagenase 3 3.4.24 0.707
3o2x 3O2Collagenase 3 3.4.24 0.707
4h76 10BMacrophage metalloelastase 3.4.24.65 0.707
3b8z 294A disintegrin and metalloproteinase with thrombospondin motifs 5 3.4.24 0.703
1ciz DPSStromelysin-1 3.4.24.17 0.702
4ja1 NGHStromelysin-1 3.4.24.17 0.701
1bzs BSINeutrophil collagenase 3.4.24.34 0.699
2a8h 4NHDisintegrin and metalloproteinase domain-containing protein 17 3.4.24.86 0.695
2ow2 8MRMatrix metalloproteinase-9 3.4.24.35 0.695
1g05 BBHStromelysin-1 3.4.24.17 0.691
1zs0 EINNeutrophil collagenase 3.4.24.34 0.670
3zxh E41Collagenase 3 3.4.24 0.666
2w14 WR2Snake venom metalloproteinase BaP1 3.4.24 0.657
2w13 WR2Snake venom metalloproteinase BaP1 3.4.24 0.656
4guy KLJMacrophage metalloelastase 3.4.24.65 0.650