Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2ovz 5MR Matrix metalloproteinase-9 3.4.24.35

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2ovz 5MRMatrix metalloproteinase-9 3.4.24.35 1.058
4gr3 R45Macrophage metalloelastase 3.4.24.65 0.785
4gql R47Macrophage metalloelastase 3.4.24.65 0.780
4gr0 R4BMacrophage metalloelastase 3.4.24.65 0.757
4gr8 R4CMacrophage metalloelastase 3.4.24.65 0.739
1hv5 RXPStromelysin-3 3.4.24 0.722
3lil EEAMacrophage metalloelastase 3.4.24.65 0.691
2i47 INNDisintegrin and metalloproteinase domain-containing protein 17 3.4.24.86 0.686
1gkc NFHMatrix metalloproteinase-9 3.4.24.35 0.678
3lik EEGMacrophage metalloelastase 3.4.24.65 0.677
2woa 023Macrophage metalloelastase 3.4.24.65 0.663
1mnc PLHNeutrophil collagenase 3.4.24.34 0.656
2azb 3TLGag-Pol polyprotein 3.4.23.16 0.650