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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2ovm AS0 Progesterone receptor

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2ovm AS0Progesterone receptor / 1.174
2ovh AS0Progesterone receptor / 1.088
2w8y 486Progesterone receptor / 0.867
4a2j AS0Progesterone receptor / 0.836
2w8y NDRProgesterone receptor / 0.809
3d90 NOGProgesterone receptor / 0.750
2aa7 1CAMineralocorticoid receptor / 0.719
1sqn NDRProgesterone receptor / 0.717
1sr7 MOFProgesterone receptor / 0.711
2ab2 SNLMineralocorticoid receptor / 0.710
3vhu SNLMineralocorticoid receptor / 0.708
2oax SNLMineralocorticoid receptor / 0.706
2abi 1CAMineralocorticoid receptor / 0.691
2aax PDNMineralocorticoid receptor / 0.671
4apu A2KProgesterone receptor / 0.660
2aa2 AS4Mineralocorticoid receptor / 0.657
2ylp TESAndrogen receptor / 0.657
2g5o DRQEstrogen receptor / 0.656
1y9r 1CAMineralocorticoid receptor / 0.652
3cmf PDN3-oxo-5-beta-steroid 4-dehydrogenase / 0.652
2aa5 STRMineralocorticoid receptor / 0.651
5dx3 ESTEstrogen receptor / 0.651