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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2oby NAP Quinone oxidoreductase PIG3 1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2oby NAPQuinone oxidoreductase PIG3 1 1.235
4rvu NDPProbable quinone reductase Qor (NADPH:quinone reductase) (Zeta-crystallin homolog protein) / 0.839
1qor NDPQuinone oxidoreductase 1 / 0.793
2j8z NAPQuinone oxidoreductase PIG3 1 0.780
4hfm NAP2-alkenal reductase (NADP(+)-dependent) / 0.762
3jyn NDPQuinone oxidoreductase / 0.731
4b7x NAPProbable oxidoreductase / 0.722
3qwb NDPProbable quinone oxidoreductase 1.6.5.5 0.721
5doz NDPJamJ / 0.704
2c0c NAPProstaglandin reductase 3 1 0.702
2y05 NAPProstaglandin reductase 1 / 0.702
1djl NAPNAD(P) transhydrogenase, mitochondrial 1.6.1.2 0.681
1guf NDPEnoyl-[acyl-carrier-protein] reductase 1, mitochondrial 1.3.1.10 0.676
2vna NAPProstaglandin reductase 2 1.3.1.48 0.673
1mb4 NDPAspartate-semialdehyde dehydrogenase 1 / 0.668
1nm5 NAPNAD(P) transhydrogenase subunit beta 1.6.1.2 0.668
5dp2 NAPCurF / 0.668
1piw NAPNADP-dependent alcohol dehydrogenase 6 1.1.1.2 0.667
1r37 NADNAD-dependent alcohol dehydrogenase 1.1.1.1 0.664
3iup NDPPossible NADH oxidoreductase / 0.660
2glx NDP1,5-anhydro-D-fructose reductase / 0.654
1yqx NAPSinapyl alcohol dehydrogenase / 0.650