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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2o5d VR1 Genome polyprotein 2.7.7.48

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2o5d VR1Genome polyprotein 2.7.7.48 1.009
4jju 1MBGenome polyprotein 2.7.7.48 0.775
4jtz 1NWGenome polyprotein 2.7.7.48 0.766
4ju6 1O6Genome polyprotein 2.7.7.48 0.728
4ju7 1O6Genome polyprotein 2.7.7.48 0.728
4j0a 1JLGenome polyprotein 2.7.7.48 0.722
4eo8 0S3Genome polyprotein 2.7.7.48 0.719
4ju1 1NZGenome polyprotein 2.7.7.48 0.713
4jtw 1NUGenome polyprotein 2.7.7.48 0.703
4ju4 1O3Genome polyprotein 2.7.7.48 0.691
2d3u CCTPolyprotein / 0.689
3mf5 HJZGenome polyprotein 2.7.7.48 0.681
2gir NN3Genome polyprotein 2.7.7.48 0.670
4ju2 1O0Genome polyprotein 2.7.7.48 0.657
4jvq 1MLGenome polyprotein 2.7.7.48 0.653