sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 2o12 | FMN | Chorismate synthase |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 2o12 | FMN | Chorismate synthase | / | 1.075 | |
| 1qxo | FMN | Chorismate synthase | / | 0.895 | |
| 4q72 | FAD | Bifunctional protein PutA | / | 0.679 | |
| 4q71 | FAD | Bifunctional protein PutA | / | 0.676 | |
| 2igo | FAD | Pyranose 2-oxidase | / | 0.675 | |
| 1oo5 | FMN | Oxygen-insensitive NAD(P)H nitroreductase | / | 0.673 | |
| 1z6l | FAD | Polyamine oxidase FMS1 | / | 0.672 | |
| 2wp5 | FAD | Trypanothione reductase | / | 0.669 | |
| 2wet | FAD | Tryptophan 5-halogenase | / | 0.668 | |
| 1wli | FMN | FMN-binding protein | / | 0.667 | |
| 1yki | FMN | Oxygen-insensitive NAD(P)H nitroreductase | / | 0.665 | |
| 2wzv | FMN | Nitroreductase NfnB | / | 0.665 | |
| 1x0p | FAD | Tll0078 protein | / | 0.664 | |
| 1gth | FAD | Dihydropyrimidine dehydrogenase [NADP(+)] | 1.3.1.2 | 0.663 | |
| 4kuk | RBF | Putative blue-light photoreceptor | / | 0.663 | |
| 1ju2 | FAD | (R)-mandelonitrile lyase 2 | 4.1.2.10 | 0.661 | |
| 2bn4 | FAD | NADPH--cytochrome P450 reductase | / | 0.659 | |
| 2yg4 | FAD | Putrescine oxidase | / | 0.658 | |
| 4jay | FAD | UDP-N-acetylenolpyruvoylglucosamine reductase | / | 0.658 | |
| 2a1u | FAD | Electron transfer flavoprotein subunit alpha, mitochondrial | / | 0.657 | |
| 4pyt | FAD | UDP-N-acetylenolpyruvoylglucosamine reductase | / | 0.657 | |
| 4fk8 | FAD | Ferredoxin--NADP reductase | / | 0.656 | |
| 2c3c | FAD | 2-oxopropyl-CoM reductase, carboxylating | 1.8.1.5 | 0.655 | |
| 3a20 | FMN | FMN-binding protein | / | 0.655 | |
| 5dkk | FMN | Predicted protein | / | 0.655 | |
| 2e0i | FAD | DNA photolyase | / | 0.653 | |
| 2yg7 | FAD | Putrescine oxidase | / | 0.653 | |
| 3haz | FAD | Bifunctional protein PutA | / | 0.653 | |
| 4z24 | FAD | Putative GMC-type oxidoreductase R135 | 1 | 0.652 | |
| 5cho | FAD | Flavin reductase | / | 0.652 | |
| 1icv | FMN | Oxygen-insensitive NAD(P)H nitroreductase | / | 0.651 | |
| 2wow | FAD | Trypanothione reductase | / | 0.650 |