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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2nmv ADP UvrABC system protein B

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2nmv ADPUvrABC system protein B / 0.989
2d7d ADPUvrABC system protein B / 0.848
2zpa ADPtRNA(Met) cytidine acetyltransferase TmcA / 0.703
2c9o ADPRuvB-like 1 3.6.4.12 0.675
4l16 ADPFidgetin-like protein 1 3.6.4 0.661
1cul GSPGuanine nucleotide-binding protein G(s) subunit alpha isoforms short / 0.660
1gp2 GDPGuanine nucleotide-binding protein G(i) subunit alpha-1 / 0.658
4qnr ATPPsp operon transcriptional activator / 0.657
1mab ATPATP synthase subunit alpha, mitochondrial / 0.652