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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2mok FMN Flavodoxin 1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2mok FMNFlavodoxin 1 / 1.107
3esz FMNFlavodoxin / 0.855
2v5u FMNFlavodoxin / 0.806
1ahn FMNFlavodoxin 1 / 0.781
1ofv FMNFlavodoxin / 0.780
3esy FMNFlavodoxin / 0.766
1czn FMNFlavodoxin / 0.755
1j8q FMNFlavodoxin / 0.746
1wsb FMNFlavodoxin / 0.739
2fx2 FMNFlavodoxin / 0.738
5xra FMNCannabinoid receptor 1 / 0.716
1xyv FMNFlavodoxin / 0.706
5xr8 FMNCannabinoid receptor 1 / 0.703
1yob FMNFlavodoxin 2 / 0.699
1azl FMNFlavodoxin / 0.698
3qe2 FMNNADPH--cytochrome P450 reductase / 0.697
1akr FMNFlavodoxin / 0.696
1amo FMNNADPH--cytochrome P450 reductase / 0.693
3qfr FMNNADPH--cytochrome P450 reductase / 0.689
2bf4 FMNNADPH--cytochrome P450 reductase / 0.677
3f90 FMNFlavodoxin / 0.674
4h2d FMNNADPH-dependent diflavin oxidoreductase 1 / 0.673
1c7f FMNFlavodoxin / 0.671
1fx1 FMNFlavodoxin / 0.671
1akw FMNFlavodoxin / 0.669
3f6s FMNFlavodoxin / 0.669
3f6r FMNFlavodoxin / 0.662
4oxx FMNCindoxin / 0.659
2v5v FMNFlavodoxin / 0.657
1tll FMNNitric oxide synthase, brain 1.14.13.39 0.651