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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2m3z 1HF Gag-Pol polyprotein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2m3z 1HFGag-Pol polyprotein / 0.877
2hxq 373Serine/threonine-protein kinase Chk1 2.7.11.1 0.664
2y7j B49Phosphorylase b kinase gamma catalytic chain, liver/testis isoform 2.7.11.19 0.659
1q41 IXMGlycogen synthase kinase-3 beta 2.7.11.26 0.654
4ks8 B49Serine/threonine-protein kinase PAK 6 2.7.11.1 0.654
2x2k X2KProto-oncogene tyrosine-protein kinase receptor Ret 2.7.10.1 0.652