Å
NMR
2013-01-28
| Name: | Gag-Pol polyprotein |
|---|---|
| ID: | POL_HV1N5 |
| AC: | P12497 |
| Organism: | Human immunodeficiency virus type 1 group M subtype B |
| Reign: | Viruses |
| TaxID: | 11698 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 0.000 |
|---|---|
| Number of residues: | 16 |
| Including | |
| Standard Amino Acids: | 15 |
| Non Standard Amino Acids: | 1 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.186 | 290.250 |
| % Hydrophobic | % Polar |
|---|---|
| 58.14 | 41.86 |
| According to VolSite | |

| HET Code: | 1HF |
|---|---|
| Formula: | C16H10N4O6S2 |
| Molecular weight: | 418.404 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 44.1 % |
| Polar Surface area: | 188.55 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 7 |
| H-Bond Donors: | 3 |
| Rings: | 4 |
| Aromatic rings: | 2 |
| Anionic atoms: | 1 |
| Cationic atoms: | 1 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 3 |
| X | Y | Z |
|---|---|---|
| -13.5659 | 4.54557 | 31.6553 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C2 | CB | ARG- 32 | 3.5 | 0 | Hydrophobic |
| N2 | O | GLY- 35 | 2.87 | 143.7 | H-Bond (Ligand Donor) |
| O | N | TRP- 37 | 2.92 | 158.45 | H-Bond (Protein Donor) |
| S | CZ3 | TRP- 37 | 4.39 | 0 | Hydrophobic |
| C5 | CZ2 | TRP- 37 | 3.4 | 0 | Hydrophobic |
| O4 | NE2 | GLN- 45 | 2.88 | 145.75 | H-Bond (Protein Donor) |
| C4 | CG | GLN- 45 | 3.87 | 0 | Hydrophobic |
| O | N | MET- 46 | 3.35 | 134.82 | H-Bond (Protein Donor) |
| S | CG | MET- 46 | 3.52 | 0 | Hydrophobic |
| S | CG | LYS- 47 | 4.09 | 0 | Hydrophobic |
| O1 | NZ | LYS- 47 | 3.09 | 141.5 | H-Bond (Protein Donor) |