Å
NMR
2013-01-28
Name: | Gag-Pol polyprotein |
---|---|
ID: | POL_HV1N5 |
AC: | P12497 |
Organism: | Human immunodeficiency virus type 1 group M subtype B |
Reign: | Viruses |
TaxID: | 11698 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 0.000 |
---|---|
Number of residues: | 16 |
Including | |
Standard Amino Acids: | 15 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.186 | 290.250 |
% Hydrophobic | % Polar |
---|---|
58.14 | 41.86 |
According to VolSite |
HET Code: | 1HF |
---|---|
Formula: | C16H10N4O6S2 |
Molecular weight: | 418.404 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 44.1 % |
Polar Surface area: | 188.55 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 7 |
H-Bond Donors: | 3 |
Rings: | 4 |
Aromatic rings: | 2 |
Anionic atoms: | 1 |
Cationic atoms: | 1 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 3 |
X | Y | Z |
---|---|---|
-13.5659 | 4.54557 | 31.6553 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C2 | CB | ARG- 32 | 3.5 | 0 | Hydrophobic |
N2 | O | GLY- 35 | 2.87 | 143.7 | H-Bond (Ligand Donor) |
O | N | TRP- 37 | 2.92 | 158.45 | H-Bond (Protein Donor) |
S | CZ3 | TRP- 37 | 4.39 | 0 | Hydrophobic |
C5 | CZ2 | TRP- 37 | 3.4 | 0 | Hydrophobic |
O4 | NE2 | GLN- 45 | 2.88 | 145.75 | H-Bond (Protein Donor) |
C4 | CG | GLN- 45 | 3.87 | 0 | Hydrophobic |
O | N | MET- 46 | 3.35 | 134.82 | H-Bond (Protein Donor) |
S | CG | MET- 46 | 3.52 | 0 | Hydrophobic |
S | CG | LYS- 47 | 4.09 | 0 | Hydrophobic |
O1 | NZ | LYS- 47 | 3.09 | 141.5 | H-Bond (Protein Donor) |