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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2j9g ANP Biotin carboxylase 6.3.4.14

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2j9g ANPBiotin carboxylase 6.3.4.14 0.999
3g8d ADPBiotin carboxylase 6.3.4.14 0.772
3rv4 ADPBiotin carboxylase 6.3.4.14 0.738
2vr1 ATFBiotin carboxylase 6.3.4.14 0.713
1dv2 ATPBiotin carboxylase 6.3.4.14 0.712
3vpc ADPGlutamate--LysW ligase ArgX 6.3.2 0.706
3vpb ADPGlutamate--LysW ligase ArgX 6.3.2 0.696
2io8 ADPBifunctional glutathionylspermidine synthetase/amidase / 0.676
2io9 ADPBifunctional glutathionylspermidine synthetase/amidase / 0.674
3wnz ADPAlanine--anticapsin ligase / 0.673
1m0w ANPGlutathione synthetase 6.3.2.3 0.671
3t9d ANPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 / 0.665
4c5b ADPD-alanine--D-alanine ligase B 6.3.2.4 0.662
5c1p ADPD-alanine--D-alanine ligase / 0.662
1z2n ADPInositol-tetrakisphosphate 1-kinase 2.7.1.134 0.660
3r5f ATPD-alanine--D-alanine ligase / 0.659
3wo0 ADPAlanine--anticapsin ligase / 0.658
4ffl ADPUncharacterized protein / 0.658
4uak ADPSerine/threonine-protein kinase MRCK beta 2.7.11.1 0.655
4cnf MTASpoU rRNA methylase / 0.654
1j1c ADPGlycogen synthase kinase-3 beta 2.7.11.26 0.653
4tnq TTPDeoxynucleoside triphosphate triphosphohydrolase SAMHD1 3.1.5 0.653
4cng SAHSpoU rRNA methylase / 0.652