Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2j7c IDE Beta-glucosidase A 3.2.1.21

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2j7c IDEBeta-glucosidase A 3.2.1.21 1.113
2j7d GI1Beta-glucosidase A 3.2.1.21 0.998
2e40 LGCBeta-glucosidase 1A 3.2.1.21 0.903
3zj6 VM2Raucaffricine-O-beta-D-glucosidase 3.2.1.125 0.885
3vil SA0Beta-glucosidase / 0.861
3ptq NFGBeta-glucosidase 12 / 0.836
4f79 P53Putative phospho-beta-glucosidase / 0.810
3ai0 PNWBeta-glucosidase / 0.807
2vrj NCWBeta-glucosidase A 3.2.1.21 0.796
3zj7 C1KStrictosidine-O-beta-D-glucosidase 3.2.1.105 0.770
4azh LOGBeta-N-acetylhexosaminidase 3.2.1.52 0.731
2wcg MT5Glucosylceramidase 3.2.1.45 0.713
4iif CTSBeta-glucosidase 1 3.2.1.21 0.702
2xwe AMFGlucosylceramidase 3.2.1.45 0.698
2wbg LGSBeta-glucosidase A 3.2.1.21 0.691
3u57 DH8Raucaffricine-O-beta-D-glucosidase 3.2.1.125 0.689
2xpk Z0MO-GlcNAcase NagJ / 0.675
3jsz UPGUncharacterized protein / 0.671
2wb5 VGBO-GlcNAcase NagJ / 0.670
3gxf IFMGlucosylceramidase 3.2.1.45 0.667
3qfz NOJCellobiose Phosphorylase / 0.660
4zlg LGCPutative b-glycan phosphorylase / 0.656
2f2h XTGAlpha-xylosidase 3.2.1.177 0.652
4gn8 ASORegucalcin 3.1.1.17 0.651