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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2ivp ATP tRNA N6-adenosine threonylcarbamoyltransferase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2ivp ATPtRNA N6-adenosine threonylcarbamoyltransferase / 0.972
2ivn ANPtRNA N6-adenosine threonylcarbamoyltransferase / 0.863
4wq4 ATPtRNA N6-adenosine threonylcarbamoyltransferase / 0.725
4ydu ADPtRNA N6-adenosine threonylcarbamoyltransferase / 0.702
4wq5 ATPtRNA N6-adenosine threonylcarbamoyltransferase / 0.676
3vew ADPnebramycin 5' synthase 6.1.2.2 0.651