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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2iuu ADP DNA translocase FtsK

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2iuu ADPDNA translocase FtsK / 0.785
4b6u M7GEukaryotic translation initiation factor 4E type 3 / 0.691
3tqc ADPPantothenate kinase / 0.689
2iut AGSDNA translocase FtsK / 0.688
3kz1 GSPTransforming protein RhoA / 0.684
1w7i ADPUnconventional myosin-Va / 0.674
4o2l GTPGTP-binding protein Rheb / 0.670
3kud GDPGTPase HRas / 0.669
4epx GDPGTPase KRas / 0.666
4tq9 GDPGTPase KRas / 0.666
3fmo ADPATP-dependent RNA helicase DDX19B 3.6.4.13 0.665
2a8g GNGAvidin / 0.664
2ffq GSPRas-related protein Rab-6B / 0.660
4k81 GTPGTPase HRas / 0.660
4pk4 ADPUnconventional myosin-VI / 0.659
4l8g GDPGTPase KRas / 0.658
2ic5 GDPRas-related C3 botulinum toxin substrate 3 / 0.656
3kji ADPCO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC / 0.654
3tkl GTPRas-related protein Rab-1A / 0.654
4dsu GDPGTPase KRas / 0.654
4hi0 GDPUrease accessory protein UreG / 0.654
4lpk GDPGTPase KRas / 0.654
4pah LNRPhenylalanine-4-hydroxylase 1.14.16.1 0.654
1xmv ADPProtein RecA / 0.653
1z6t ADPApoptotic protease-activating factor 1 / 0.653
1cxz GSPTransforming protein RhoA / 0.652
5irn ADPNucleotide binding oligomerization domain containing 2 / 0.652
1gwn GTPRho-related GTP-binding protein RhoE / 0.651
1jx2 ADPMyosin-2 heavy chain / 0.651
1m7b GTPRho-related GTP-binding protein RhoE / 0.651
1z0a GDPRas-related protein Rab-2A / 0.651
1zd9 GDPADP-ribosylation factor-like protein 8A / 0.651
2c5l GTPGTPase HRas / 0.651
3fwy ADPLight-independent protochlorophyllide reductase iron-sulfur ATP-binding protein / 0.651
3gcm 5GPPolyribonucleotide nucleotidyltransferase / 0.651
3mjh GTPRas-related protein Rab-5A / 0.651
3x1w GDPRas-related protein Rap-1b / 0.651
4qxa GTPRas-related protein Rab-9A / 0.651
1yi4 ADNSerine/threonine-protein kinase pim-1 2.7.11.1 0.650
4epw GDPGTPase KRas / 0.650
4iei ADPGene 2 protein / 0.650
4pfp ADPUnconventional myosin-VI / 0.650
4q02 GDPGTPase KRas / 0.650