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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2ifa FMN Uncharacterized protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2ifa FMNUncharacterized protein / 1.185
3gag FMNPutative NADH dehydrogenase NAD(P)H nitroreductase / 0.833
2isk FNR5,6-dimethylbenzimidazole synthase 1.13.11.79 0.825
2isj FMN5,6-dimethylbenzimidazole synthase 1.13.11.79 0.805
3gfd FMNIodotyrosine deiodinase 1 1.21.1.1 0.779
2wzw FMNNitroreductase NfnB / 0.774
4ttc FMNIodotyrosine deiodinase 1 / 0.768
2wzv FMNNitroreductase NfnB / 0.764
4ttb FMNIodotyrosine deiodinase 1 / 0.764
1oon FMNOxygen-insensitive NAD(P)H nitroreductase / 0.762
2isl FNR5,6-dimethylbenzimidazole synthase 1.13.11.79 0.761
1kqb FMNOxygen-insensitive NAD(P)H nitroreductase / 0.753
1yki FMNOxygen-insensitive NAD(P)H nitroreductase / 0.752
1icu FMNOxygen-insensitive NAD(P)H nitroreductase / 0.749
3eo8 FMNPutative nitroreductase / 0.749
1kqc FMNOxygen-insensitive NAD(P)H nitroreductase / 0.738
4xoo FMNCoenzyme F420:L-glutamate ligase / 0.737
1kqd FMNOxygen-insensitive NAD(P)H nitroreductase / 0.736
3ge6 FMNNitroreductase / 0.733
1oo5 FMNOxygen-insensitive NAD(P)H nitroreductase / 0.719
1ooq FMNOxygen-insensitive NAD(P)H nitroreductase / 0.717
1vfr FMNMajor NAD(P)H-flavin oxidoreductase 1.6.99 0.716
1ds7 FMNOxygen-insensitive NAD(P)H nitroreductase / 0.712
3pxv FMNNitroreductase / 0.703
3qdl FMNOxygen-insensitive NADPH nitroreductase / 0.702
4qly FMNEnone reductase CLA-ER / 0.699
3gh8 FMNIodotyrosine deiodinase 1 1.21.1.1 0.697
1icv FMNOxygen-insensitive NAD(P)H nitroreductase / 0.696
1ylr FMNOxygen-insensitive NAD(P)H nitroreductase / 0.689
4eo3 FMNBacterioferritin comigratory protein/NADH dehydrogenase / 0.689
3to0 FMNIodotyrosine deiodinase 1 1.21.1.1 0.683
3e39 FMNNitroreductase / 0.680
2hay FMNPutative NAD(P)H-flavin oxidoreductase / 0.673
3bi5 FADPolyamine oxidase FMS1 / 0.673
5af7 FADAcyl-CoA dehydrogenase / 0.666
5j4e FMNSensory box protein / 0.665
3cnd FADPolyamine oxidase FMS1 / 0.663
5efw FMNNPH1-1 / 0.661
1reo FADL-amino-acid oxidase 1.4.3.2 0.659
3se5 ANPAdenosine monophosphate-protein transferase NmFic 2.7.7.n1 0.658
5ahs FADAcyl-CoA dehydrogenase / 0.658
1z6l FADPolyamine oxidase FMS1 / 0.657
3k7m FAD6-hydroxy-L-nicotine oxidase / 0.653
5g3s FDAFlavin-dependent L-tryptophan oxidase VioA / 0.653
1nec FMNOxygen-insensitive NAD(P)H nitroreductase 1 0.652
4fdu IHSPutative multiple inositol polyphosphate histidine phosphatase 1 / 0.652
2b3d FADModulator of drug activity B / 0.650
2eba FADPutative glutaryl-CoA dehydrogenase / 0.650
2iid FADL-amino-acid oxidase 1.4.3.2 0.650
3eof FMNPutative oxidase / 0.650
3koq FMNPutative nitroreductase / 0.650