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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2huq SAH Diphthine synthase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2huq SAHDiphthine synthase / 1.103
2owg SAHDiphthine synthase / 1.077
2eh4 SAHDiphthine synthase / 1.074
2en5 SAHDiphthine synthase / 1.074
2dxw SAHDiphthine synthase / 1.073
2el0 SAHDiphthine synthase / 1.073
2emr SAHDiphthine synthase / 1.073
2pcg SAHDiphthine synthase / 1.073
2dv3 SAHDiphthine synthase / 1.072
2e8r SAHDiphthine synthase / 1.072
2e8s SAHDiphthine synthase / 1.072
2eka SAHDiphthine synthase / 1.072
2ek4 SAHDiphthine synthase / 1.059
1wng SAHDiphthine synthase / 1.058
2dek SAHDiphthine synthase / 1.058
2eh5 SAHDiphthine synthase / 1.058
2huv SAHDiphthine synthase / 1.058
2pb5 SAHDiphthine synthase / 1.058
2e7r SAHDiphthine synthase / 1.056
2egb SAHDiphthine synthase / 1.056
2egs SAHDiphthine synthase / 1.056
2el3 SAHDiphthine synthase / 1.056
2pch SAHDiphthine synthase / 1.056
2z6r SAHDiphthine synthase / 1.056
2e07 SAHDiphthine synthase / 1.055
2e4n SAHDiphthine synthase / 1.055
2ehl SAHDiphthine synthase / 1.055
2ek2 SAHDiphthine synthase / 1.055
2ele SAHDiphthine synthase / 1.055
2pca SAHDiphthine synthase / 1.055
2dv5 SAHDiphthine synthase / 1.054
2dxx SAHDiphthine synthase / 1.054
2egl SAHDiphthine synthase / 1.054
2ek7 SAHDiphthine synthase / 1.054
2owk SAHDiphthine synthase / 1.054
2pcm SAHDiphthine synthase / 1.054
2e08 SAHDiphthine synthase / 1.053
2e15 SAHDiphthine synthase / 1.053
2owu SAHDiphthine synthase / 1.053
2p5f SAHDiphthine synthase / 1.053
2e17 SAHDiphthine synthase / 1.052
2p6l SAHDiphthine synthase / 1.052
2ek3 SAHDiphthine synthase / 1.051
2eeq SAHDiphthine synthase / 1.050
2e8h SAHDiphthine synthase / 1.045
2hut SAHDiphthine synthase / 1.040
2ed5 SAHDiphthine synthase / 1.039
2p9d SAHDiphthine synthase / 1.039
2p6i SAHDiphthine synthase / 1.038
2dxv SAHDiphthine synthase / 1.037
2e8q SAHDiphthine synthase / 1.037
2eh2 SAHDiphthine synthase / 1.037
2ejj SAHDiphthine synthase / 1.037
2p6k SAHDiphthine synthase / 1.037
2owv SAHDiphthine synthase / 1.035
1vce SAHDiphthine synthase / 1.034
2dsg SAHDiphthine synthase / 1.034
2dsh SAHDiphthine synthase / 1.034
2p2x SAHDiphthine synthase / 1.034
2dv4 SAHDiphthine synthase / 1.032
2e16 SAHDiphthine synthase / 1.032
2p6d SAHDiphthine synthase / 1.031
2eld SAHDiphthine synthase / 1.024
2pb6 SAHDiphthine synthase / 1.024
2eni SAHDiphthine synthase / 1.023
2dv7 SAHDiphthine synthase / 1.020
2pck SAHDiphthine synthase / 1.020
2ejk SAHDiphthine synthase / 1.012
2pb4 SAHDiphthine synthase / 1.012
2dsi SAHDiphthine synthase / 1.010
2p5c SAHDiphthine synthase / 1.009
2pci SAHDiphthine synthase / 0.970
2emu SAHDiphthine synthase / 0.969
2hux SAHDiphthine synthase / 0.956
2hr8 SAHDiphthine synthase / 0.896
2owf SAHDiphthine synthase / 0.769
2ejz SAHDiphthine synthase / 0.722
2qbu SAHPrecorrin-2 methyltransferase / 0.696
1s4d SAHUroporphyrinogen-III C-methyltransferase 2.1.1.107 0.695
2ed3 SAHDiphthine synthase / 0.687
3ndc SAHPrecorrin-4 C(11)-methyltransferase 2.1.1.133 0.682
2ha8 SAHProbable methyltransferase TARBP1 / 0.678
3s3t ATPUniversal stress protein / 0.676
1cbf SAHCobalt-precorrin-4 C(11)-methyltransferase 2.1.1.271 0.671
3nd1 SAHPrecorrin-6A synthase (Deacetylating) / 0.668
5a7y SAHtRNA (adenine(9)-N1)-methyltransferase 2.1.1.218 0.664
2hma SAMtRNA-specific 2-thiouridylase MnmA / 0.663
1j21 ATPArgininosuccinate synthase / 0.654
3i12 ADPD-alanine--D-alanine ligase A 6.3.2.4 0.654
4rrb A3TProbable threonine--tRNA ligase 2 6.1.1.3 0.653
4rr8 A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.652
4rrh A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.651
3pd2 A3SThreonine--tRNA ligase 6.1.1.3 0.650