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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2hu6 37A Macrophage metalloelastase 3.4.24.65

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2hu6 37AMacrophage metalloelastase 3.4.24.65 0.979
3ljg EEFMacrophage metalloelastase 3.4.24.65 0.760
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
3lik EEGMacrophage metalloelastase 3.4.24.65 0.731
2woa 576Macrophage metalloelastase 3.4.24.65 0.712
4i03 L88Macrophage metalloelastase 3.4.24.65 0.699
2wo8 077Macrophage metalloelastase 3.4.24.65 0.697
2wo9 068Macrophage metalloelastase 3.4.24.65 0.686
4guy KLJMacrophage metalloelastase 3.4.24.65 0.683
3tsk QEGMacrophage metalloelastase 3.4.24.65 0.682
3ts4 EEGMacrophage metalloelastase 3.4.24.65 0.677
4e5f 0N7Polymerase acidic protein / 0.660
1c8t TR1Stromelysin-1 3.4.24.17 0.650