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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2hu4 G39 Neuraminidase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2hu4 G39Neuraminidase / 1.170
3cl2 G39Neuraminidase / 1.015
1s0j MUSTrans-sialidase / 0.706
3o5t ADPNitrogen regulatory protein P-II 1 / 0.666
1toj HCIAspartate aminotransferase 2.6.1.1 0.662
3tqb FOLDihydrofolate reductase / 0.654
4dbc 3QPAspartate aminotransferase 2.6.1.1 0.652
4hj2 LZ6Glutathione S-transferase A1 2.5.1.18 0.650