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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2hp2 KE4 Glutamate-1-semialdehyde 2,1-aminomutase 5.4.3.8

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2hp2 KE4Glutamate-1-semialdehyde 2,1-aminomutase 5.4.3.8 1.142
4aoa IK2Beta-phenylalanine transaminase 2.6.1 0.774
3tfu PL8Adenosylmethionine-8-amino-7-oxononanoate aminotransferase 2.6.1.62 0.764
4adc PLPSuccinylornithine transaminase 2.6.1.81 0.744
4zm3 PLPAminotransferase / 0.742
4jey PLPAcetylornithine/succinyldiaminopimelate aminotransferase 2.6.1.11 0.741
1mlz PLPAdenosylmethionine-8-amino-7-oxononanoate aminotransferase 2.6.1.62 0.734
4zwm PLPOrnithine aminotransferase, mitochondrial, putative / 0.723
1wkg POI[LysW]-aminoadipate semialdehyde transaminase / 0.721
1wkh PPE[LysW]-aminoadipate semialdehyde transaminase / 0.721
4jf1 PLPAcetylornithine/succinyldiaminopimelate aminotransferase 2.6.1.11 0.709
1s07 PLPAdenosylmethionine-8-amino-7-oxononanoate aminotransferase 2.6.1.62 0.705
5k8b PDG8-amino-3,8-dideoxy-alpha-D-manno-octulosonate transaminase / 0.695
2pb2 PLPAcetylornithine/succinyldiaminopimelate aminotransferase 2.6.1.11 0.676
3vax PLPUncharacterized protein / 0.675
2ykv IK2Beta-transaminase / 0.671
1u08 PLPMethionine aminotransferase / 0.670
2gms P0PPutative pyridoxamine 5-phosphate-dependent dehydrase / 0.659
3zrr PXGSerine-pyruvate aminotransferase (AgxT) / 0.657
4ba5 PXGProbable aminotransferase / 0.652