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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2hj3 FAD FAD-linked sulfhydryl oxidase ERV1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2hj3 FADFAD-linked sulfhydryl oxidase ERV1 / 1.293
3u5s FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 0.984
1jr8 FADFAD-linked sulfhydryl oxidase ERV2 1.8.3.2 0.953
4ldk FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 0.936
3tk0 FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 0.934
3u2l FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 0.931
3u2m FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 0.927
3w4y FADMitochondrial FAD-linked sulfhydryl oxidase ERV1 1.8.3.2 0.924
3r7c FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 0.912
1oqc FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 0.904
1jra FADFAD-linked sulfhydryl oxidase ERV2 1.8.3.2 0.898
4e0h FADMitochondrial FAD-linked sulfhydryl oxidase ERV1 1.8.3.2 0.895
3mbg FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 0.875
3llk FADSulfhydryl oxidase 1 1.8.3.2 0.854
3lli FADSulfhydryl oxidase 1 1.8.3.2 0.842
4e0i FADMitochondrial FAD-linked sulfhydryl oxidase ERV1 1.8.3.2 0.810
3t59 FADSulfhydryl oxidase 1 1.8.3.2 0.790
3gwl FADFAD-linked sulfhydryl oxidase 1.8.3.2 0.785
3t58 FADSulfhydryl oxidase 1 1.8.3.2 0.784
1rp4 FADEndoplasmic oxidoreductin-1 1.8.4 0.691
3m31 FADEndoplasmic oxidoreductin-1 1.8.4 0.689
1rq1 FADEndoplasmic oxidoreductin-1 1.8.4 0.675
3ic9 FADPutative dihydrolipoamide dehydrogenase / 0.672
3gwn FADProbable FAD-linked sulfhydryl oxidase R596 1.8.3.2 0.671
3qzy FADFAD-linked sulfhydryl oxidase / 0.665
4p2l FADSulfhydryl oxidase 1 1.8.3.2 0.663
4opt FDAConserved Archaeal protein / 0.660
4opg FDAConserved Archaeal protein / 0.659
1krh FADBenzoate 1,2-dioxygenase electron transfer component 1.18.1.3 0.652