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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2hah 3TL POL protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2hah 3TLPOL protein / 0.936
1b11 3TLPol polyprotein / 0.778
1fmb HYBPol polyprotein / 0.698
3kfp 3TLGag-Pol polyprotein / 0.690
4fiv LP1POL protein / 0.684
2a1e IPFGag-Pol polyprotein 3.4.23.16 0.683
2aoe 0Q4Gag-Pol polyprotein 3.4.23.16 0.671
3nwx KVSGag-Pol polyprotein 3.4.23.16 0.663
2azb 3TLGag-Pol polyprotein 3.4.23.16 0.660
2p3c 3TLProtease / 0.654