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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2gn6 UD1 UDP-N-acetylglucosamine 4,6-dehydratase (inverting) 4.2.1.115

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2gn6 UD1UDP-N-acetylglucosamine 4,6-dehydratase (inverting) 4.2.1.115 1.235
1i24 UPGUDP-sulfoquinovose synthase, chloroplastic 3.13.1.1 0.662
1i2c UPGUDP-sulfoquinovose synthase, chloroplastic 3.13.1.1 0.662
1wvg CXYCDP-glucose 4,6-dehydratase 4.2.1.45 0.653