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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2gir NN3 Genome polyprotein 2.7.7.48

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2gir NN3Genome polyprotein 2.7.7.48 1.115
3mf5 HJZGenome polyprotein 2.7.7.48 0.970
4eo8 0S3Genome polyprotein 2.7.7.48 0.902
4ju6 1O6Genome polyprotein 2.7.7.48 0.834
4ju7 1O6Genome polyprotein 2.7.7.48 0.834
2d3u CCTPolyprotein / 0.814
4jju 1MBGenome polyprotein 2.7.7.48 0.756
4jvq 1MLGenome polyprotein 2.7.7.48 0.754
2hwh RNAGenome polyprotein 2.7.7.48 0.733
4j0a 1JLGenome polyprotein 2.7.7.48 0.704
4ju3 1O1Genome polyprotein 2.7.7.48 0.686
4ju4 1O3Genome polyprotein 2.7.7.48 0.676
2o5d VR1Genome polyprotein 2.7.7.48 0.670
4jty 1NVGenome polyprotein 2.7.7.48 0.668
4jtw 1NUGenome polyprotein 2.7.7.48 0.653