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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2gcq DOI Adenylosuccinate synthetase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2gcq DOIAdenylosuccinate synthetase / 1.220
1cg3 IMOAdenylosuccinate synthetase / 1.164
1p9b IMOAdenylosuccinate synthetase / 1.059
1cg0 IMOAdenylosuccinate synthetase / 1.052
1cg1 IMOAdenylosuccinate synthetase / 1.018
1lon IMOAdenylosuccinate synthetase isozyme 1 / 0.983
1cg4 IMOAdenylosuccinate synthetase / 0.964
1lny IMOAdenylosuccinate synthetase isozyme 1 / 0.938
2dgn DOIAdenylosuccinate synthetase isozyme 1 / 0.831
1ksz PGSAdenylosuccinate synthetase / 0.830
1nht PGSAdenylosuccinate synthetase / 0.792
1qf5 RPLAdenylosuccinate synthetase / 0.711
5a02 NAPGlucose-fructose oxidoreductase / 0.658