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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2g1q N9H Kinesin-like protein KIF11

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2g1q N9HKinesin-like protein KIF11 / 1.018
2q2z MKKKinesin-like protein KIF11 / 0.748
1drt PCVClavaminate synthase 1 1.14.11.21 0.744
3elu SAMMethyltransferase / 0.744
3ty3 GGGHomoisocitrate dehydrogenase 1.1.1.87 0.744
3k3b L31Kinesin-like protein KIF11 / 0.724
2fme 3QCKinesin-like protein KIF11 / 0.689
1x88 NATKinesin-like protein KIF11 / 0.650