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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2fzn FAD Bifunctional protein PutA 1.5.5.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2fzn FADBifunctional protein PutA 1.5.5.2 1.725
1tj0 FADBifunctional protein PutA 1.5.5.2 1.611
1tj1 FADBifunctional protein PutA 1.5.5.2 1.601
4o8a FADBifunctional protein PutA 1.2.1.88 1.596
1tj2 FADBifunctional protein PutA 1.5.5.2 1.586
2fzm FADBifunctional protein PutA 1.5.5.2 1.472
4nmb FADBifunctional protein PutA / 1.468
4nm9 FADBifunctional protein PutA / 1.428
4q72 FADBifunctional protein PutA / 1.339
4q73 FADBifunctional protein PutA / 1.325
3e2s FADBifunctional protein PutA 1.5.5.2 1.308
3haz FADBifunctional protein PutA / 1.274
4q71 FADBifunctional protein PutA / 1.265
4nmd FDABifunctional protein PutA / 1.192
4nmc FADBifunctional protein PutA / 0.956
4h6r FDAProline dehydrogenase / 0.883
2g37 FADProline dehydrogenase / 0.732
3sfd FADSuccinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial / 0.707
1n9n FMNPutative blue light receptor / 0.703
3gfz FMNUncharacterized protein / 0.690
4wf0 FMNNPH1-1 / 0.688
3d72 FADVivid PAS protein VVD / 0.684
3n39 FMNProtein NrdI / 0.669
1cqx FADFlavohemoprotein / 0.667
2a1u FADElectron transfer flavoprotein subunit alpha, mitochondrial / 0.660
3w5u FADFerredoxin / 0.659
5kbw RBFRiboflavin transporter RibU / 0.659
1fea FADTrypanothione reductase 1.8.1.12 0.658
3vqr FADPutative oxidoreductase / 0.658
4u2t FADCholesterol oxidase 1.1.3.6 0.657
2gou FMNNADH:flavin oxidoreductase Sye1 / 0.656
4hj3 FMNLOV protein / 0.654
4k5r FADOxygenase / 0.654
1efv FADElectron transfer flavoprotein subunit alpha, mitochondrial / 0.651