Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2ft9 CHD Fatty acid-binding protein 2, liver

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2ft9 CHDFatty acid-binding protein 2, liver / 1.073
1xu7 CPSCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.697
3f3y 4OABile salt sulfotransferase 2.8.2.14 0.695
2aa7 1CAMineralocorticoid receptor / 0.692
2pnj CHDFerrochelatase, mitochondrial 4.99.1.1 0.688
1fm4 DXCMajor pollen allergen Bet v 1-L / 0.680
3k9v CPS1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial / 0.680
1ot7 IU5Bile acid receptor / 0.678
3cot STR3-oxo-5-beta-steroid 4-dehydrogenase / 0.675
2rlc CHDCholoylglycine hydrolase 3.5.1.24 0.673
4ple CPSNuclear receptor subfamily 5 group A member 2 / 0.673
4nky 3QZSteroid 17-alpha-hydroxylase/17,20 lyase / 0.670
2mm3 CHOGastrotropin / 0.669
1kdm DHTSex hormone-binding globulin / 0.665
4ofu DHTAndrogen receptor / 0.665
3uzz ASD3-oxo-5-beta-steroid 4-dehydrogenase / 0.664
1f5f DHTSex hormone-binding globulin / 0.663
2aa5 STRMineralocorticoid receptor / 0.661
3g1r FIT3-oxo-5-beta-steroid 4-dehydrogenase / 0.661
2qd5 CHDFerrochelatase, mitochondrial 4.99.1.1 0.658
3q95 ESLEstrogen receptor / 0.658
2b01 TUDPhospholipase A2, major isoenzyme 3.1.1.4 0.657
1lho AOMSex hormone-binding globulin / 0.652
5l7d CLRSmoothened homolog / 0.652