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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2fre FMN NAD(P)H-flavin oxidoreductase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2fre FMNNAD(P)H-flavin oxidoreductase / 1.283
4eo3 FMNBacterioferritin comigratory protein/NADH dehydrogenase / 0.832
2wzv FMNNitroreductase NfnB / 0.796
2wzw FMNNitroreductase NfnB / 0.796
1nec FMNOxygen-insensitive NAD(P)H nitroreductase 1 0.789
3qdl FMNOxygen-insensitive NADPH nitroreductase / 0.788
1oo5 FMNOxygen-insensitive NAD(P)H nitroreductase / 0.777
1vfr FMNMajor NAD(P)H-flavin oxidoreductase 1.6.99 0.775
1ooq FMNOxygen-insensitive NAD(P)H nitroreductase / 0.769
3gfd FMNIodotyrosine deiodinase 1 1.21.1.1 0.768
3gh8 FMNIodotyrosine deiodinase 1 1.21.1.1 0.768
1ylu FMNOxygen-insensitive NAD(P)H nitroreductase / 0.761
1oon FMNOxygen-insensitive NAD(P)H nitroreductase / 0.757
3koq FMNPutative nitroreductase / 0.753
3bem FMNPutative NAD(P)H nitroreductase MhqN 1 0.751
1icu FMNOxygen-insensitive NAD(P)H nitroreductase / 0.750
3pxv FMNNitroreductase / 0.750
1ylr FMNOxygen-insensitive NAD(P)H nitroreductase / 0.744
2hay FMNPutative NAD(P)H-flavin oxidoreductase / 0.744
3x22 FMNOxygen-insensitive NAD(P)H nitroreductase / 0.744
4qly FMNEnone reductase CLA-ER / 0.741
3gag FMNPutative NADH dehydrogenase NAD(P)H nitroreductase / 0.738
1kqc FMNOxygen-insensitive NAD(P)H nitroreductase / 0.735
1ds7 FMNOxygen-insensitive NAD(P)H nitroreductase / 0.728
3hj9 FMNUncharacterized protein / 0.725
1yki FMNOxygen-insensitive NAD(P)H nitroreductase / 0.724
1kqd FMNOxygen-insensitive NAD(P)H nitroreductase / 0.721
3ge6 FMNNitroreductase / 0.721
1icv FMNOxygen-insensitive NAD(P)H nitroreductase / 0.719
1kqb FMNOxygen-insensitive NAD(P)H nitroreductase / 0.718
3of4 FMNNitroreductase / 0.714
2isl FNR5,6-dimethylbenzimidazole synthase 1.13.11.79 0.710
2eba FADPutative glutaryl-CoA dehydrogenase / 0.695
4ttb FMNIodotyrosine deiodinase 1 / 0.684
3x21 FMNOxygen-insensitive NAD(P)H nitroreductase / 0.682
4ttc FMNIodotyrosine deiodinase 1 / 0.679
3nf4 FADAcyl-CoA dehydrogenase domain-containing protein / 0.671
1ofv FMNFlavodoxin / 0.669
2q3o FMN12-oxophytodienoate reductase 3 1.3.1.42 0.667
3atq FDAConserved Archaeal protein / 0.667
4opc FDAConserved Archaeal protein / 0.667
4opl FDAConserved Archaeal protein / 0.662
5a8a FMNRiboflavin biosynthesis protein RibF 2.7.1.26 0.662
2iid FADL-amino-acid oxidase 1.4.3.2 0.660
4j8p FMNFlavodoxin / 0.660
3eo8 FMNPutative nitroreductase / 0.658
1t9g FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.656
4rnu FMNNADPH dehydrogenase 1 1.6.99.1 0.656
2isj FMN5,6-dimethylbenzimidazole synthase 1.13.11.79 0.652
1h7w FADDihydropyrimidine dehydrogenase [NADP(+)] 1.3.1.2 0.651
1gte FADDihydropyrimidine dehydrogenase [NADP(+)] 1.3.1.2 0.650
2q3r FMN12-oxophytodienoate reductase 1 1.3.1.42 0.650
4dq1 UMPThymidylate synthase / 0.650
4hnb FMNLOV protein / 0.650
4m0c FMNFMN-dependent NADH-azoreductase 1 / 0.650
4opu FDAConserved Archaeal protein / 0.650