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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2fai 459 Estrogen receptor

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2fai 459Estrogen receptor / 1.093
1zky 689Estrogen receptor / 0.793
2qgt EEDEstrogen receptor / 0.748
4e5i 0N9Polymerase acidic protein / 0.744
3erd DESEstrogen receptor / 0.738
2g5o DRQEstrogen receptor / 0.731
2j7x ESTEstrogen receptor beta / 0.725
3uud ESTEstrogen receptor / 0.725
5dxg ESTEstrogen receptor / 0.706
2p15 EZTEstrogen receptor / 0.705
1xqc AEJEstrogen receptor / 0.692
2yat EEUEstrogen receptor / 0.682
3q95 ESLEstrogen receptor / 0.676
4zn7 DESEstrogen receptor / 0.673
1uom PTIEstrogen receptor / 0.669
2qe4 JJ3Estrogen receptor / 0.663
4e5f 0N7Polymerase acidic protein / 0.660
1x7e 244Estrogen receptor / 0.652