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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2f94 BFQ Farnesyl pyrophosphate synthase 2.5.1.10

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2f94 BFQFarnesyl pyrophosphate synthase 2.5.1.10 1.145
4h5d YS4Farnesyl pyrophosphate synthase 2.5.1.10 0.963
4h5c YS4Farnesyl pyrophosphate synthase 2.5.1.10 0.951
4h5e YS4Farnesyl pyrophosphate synthase 2.5.1.10 0.944
4lfv YS4Farnesyl pyrophosphate synthase 2.5.1.10 0.943
3rye UNRFarnesyl pyrophosphate synthase 2.5.1.10 0.929
3ez3 ZOLFarnesyl pyrophosphate synthase, putative / 0.904
3ldw ZOLFarnesyl pyrophosphate synthase, putative / 0.899
4ga3 4GAFarnesyl pyrophosphate synthase 2.5.1.10 0.877
4nke RISFarnesyl pyrophosphate synthase 2.5.1.10 0.871
2z52 H23Geranylgeranyl pyrophosphate synthase / 0.848
4kqs RISFarnesyl pyrophosphate synthase 2.5.1.10 0.846
3egt 722Farnesyl pyrophosphate synthase / 0.836
1zw5 ZOLFarnesyl pyrophosphate synthase 2.5.1.10 0.815
2e95 B75Geranylgeranyl pyrophosphate synthase / 0.810
3icz PB6Farnesyl pyrophosphate synthase / 0.798
3rbm B73Farnesyl pyrophosphate synthase, putative / 0.793
4q23 RISFarnesyl pyrophosphate synthase 2.5.1.10 0.783
4jvj 1MVFarnesyl pyrophosphate synthase 2.5.1.10 0.776
2z4z SC0Geranylgeranyl pyrophosphate synthase / 0.774
4dxj 0M9Farnesyl pyrophosphate synthase / 0.770
1yv5 RISFarnesyl pyrophosphate synthase 2.5.1.10 0.753
4dem YS4Farnesyl pyrophosphate synthase 2.5.1.10 0.750
2z4w 749Geranylgeranyl pyrophosphate synthase / 0.745
3dyh 721Farnesyl pyrophosphate synthase / 0.745
2i19 1BYFarnesyl pyrophosphate synthase / 0.733
1yq7 RISFarnesyl pyrophosphate synthase 2.5.1.10 0.728
3ryw K9HFarnesyl pyrophosphate synthase, putative / 0.721
5ero 210Fusicoccadiene synthase 2.5.1.29 0.719
4dwb 0M7Farnesyl pyrophosphate synthase / 0.718
2o1o RISPutative farnesyl pyrophosphate synthase / 0.702
5erm 210Fusicoccadiene synthase 4.2.3.43 0.700
3krf DSTGeranyl diphosphate synthase large subunit / 0.691
2opm NI9Farnesyl pyrophosphate synthase 2.5.1.10 0.688
2z50 028Geranylgeranyl pyrophosphate synthase / 0.684
4l2x YL2Farnesyl pyrophosphate synthase 2.5.1.10 0.682
2olr ATPPhosphoenolpyruvate carboxykinase (ATP) / 0.674
2z4y 252Geranylgeranyl pyrophosphate synthase / 0.668
1khb GCPPhosphoenolpyruvate carboxykinase, cytosolic [GTP] 4.1.1.32 0.664
3tgp GNPGTPase HRas / 0.661
1mx0 ANPType 2 DNA topoisomerase 6 subunit B / 0.658
2py7 ATPPhosphoenolpyruvate carboxykinase (ATP) / 0.658
2e91 ZOLGeranylgeranyl pyrophosphate synthase / 0.657
2jiz ANPATP synthase subunit beta, mitochondrial 3.6.3.14 0.657
3qbt GNPRas-related protein Rab-8A / 0.657
3m0e ATPTranscriptional regulator (NtrC family) / 0.652
1rqj RISFarnesyl diphosphate synthase 2.5.1.10 0.651
3ruv ANPChaperonin / 0.650