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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2e82 IM3 D-amino-acid oxidase 1.4.3.3

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2e82 IM3D-amino-acid oxidase 1.4.3.3 0.881
3mw0 BHRNickel-binding periplasmic protein / 0.672
3mz9 BHNNickel-binding periplasmic protein / 0.670
3mzb BHRNickel-binding periplasmic protein / 0.666
3rt8 CWDGlutamate receptor 3 / 0.666
8atc PALAspartate carbamoyltransferase catalytic subunit 2.1.3.2 0.664
4umy NAPIsocitrate dehydrogenase [NADP] cytoplasmic 1.1.1.42 0.662
4ax8 SAMO-antigen chain terminator bifunctional methyltransferase/kinase WbdD / 0.659
2bjs ACVIsopenicillin N synthase 1.21.3.1 0.656
3o5t ADPNitrogen regulatory protein P-II 1 / 0.654
4l06 NAPIsocitrate dehydrogenase [NADP] cytoplasmic 1.1.1.42 0.650