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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2e4n SAH Diphthine synthase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2e4n SAHDiphthine synthase / 1.105
2dxx SAHDiphthine synthase / 1.101
2ek7 SAHDiphthine synthase / 1.101
2ele SAHDiphthine synthase / 1.100
2p9d SAHDiphthine synthase / 1.100
2p6l SAHDiphthine synthase / 1.099
2en5 SAHDiphthine synthase / 1.098
2eni SAHDiphthine synthase / 1.098
2eh4 SAHDiphthine synthase / 1.097
2p6k SAHDiphthine synthase / 1.097
2pb5 SAHDiphthine synthase / 1.097
2pcm SAHDiphthine synthase / 1.097
2e8r SAHDiphthine synthase / 1.095
2e8s SAHDiphthine synthase / 1.095
2ek4 SAHDiphthine synthase / 1.095
2emr SAHDiphthine synthase / 1.095
2pcg SAHDiphthine synthase / 1.095
2pck SAHDiphthine synthase / 1.095
2ek3 SAHDiphthine synthase / 1.094
2eka SAHDiphthine synthase / 1.094
2el3 SAHDiphthine synthase / 1.094
2eh5 SAHDiphthine synthase / 1.093
2pb6 SAHDiphthine synthase / 1.091
2dxw SAHDiphthine synthase / 1.082
2eh2 SAHDiphthine synthase / 1.082
2owk SAHDiphthine synthase / 1.081
2e08 SAHDiphthine synthase / 1.080
2e17 SAHDiphthine synthase / 1.079
2p6i SAHDiphthine synthase / 1.079
2dv3 SAHDiphthine synthase / 1.077
2ed5 SAHDiphthine synthase / 1.077
2pca SAHDiphthine synthase / 1.077
2eld SAHDiphthine synthase / 1.076
2p5f SAHDiphthine synthase / 1.075
2ek2 SAHDiphthine synthase / 1.074
2p6d SAHDiphthine synthase / 1.073
2pci SAHDiphthine synthase / 1.071
2owg SAHDiphthine synthase / 1.070
2z6r SAHDiphthine synthase / 1.065
2dxv SAHDiphthine synthase / 1.064
2e07 SAHDiphthine synthase / 1.064
2e7r SAHDiphthine synthase / 1.064
2ehl SAHDiphthine synthase / 1.064
2egb SAHDiphthine synthase / 1.063
2e15 SAHDiphthine synthase / 1.062
2egl SAHDiphthine synthase / 1.062
2ejj SAHDiphthine synthase / 1.062
2dek SAHDiphthine synthase / 1.061
2dv7 SAHDiphthine synthase / 1.061
2emu SAHDiphthine synthase / 1.061
2dsg SAHDiphthine synthase / 1.060
2dsh SAHDiphthine synthase / 1.060
2e16 SAHDiphthine synthase / 1.059
2pch SAHDiphthine synthase / 1.059
2egs SAHDiphthine synthase / 1.058
2owu SAHDiphthine synthase / 1.058
2e8h SAHDiphthine synthase / 1.057
2el0 SAHDiphthine synthase / 1.057
2dv5 SAHDiphthine synthase / 1.056
2pb4 SAHDiphthine synthase / 1.056
1wng SAHDiphthine synthase / 1.055
2huq SAHDiphthine synthase / 1.055
2hut SAHDiphthine synthase / 1.055
2huv SAHDiphthine synthase / 1.055
2eeq SAHDiphthine synthase / 1.053
2p5c SAHDiphthine synthase / 1.050
2dv4 SAHDiphthine synthase / 1.043
2ejk SAHDiphthine synthase / 1.043
2e8q SAHDiphthine synthase / 1.040
2owv SAHDiphthine synthase / 1.032
2p2x SAHDiphthine synthase / 1.026
2dsi SAHDiphthine synthase / 1.022
1vce SAHDiphthine synthase / 1.005
2hux SAHDiphthine synthase / 0.922
2hr8 SAHDiphthine synthase / 0.884
2ejz SAHDiphthine synthase / 0.803
2owf SAHDiphthine synthase / 0.722
3ndc SAHPrecorrin-4 C(11)-methyltransferase 2.1.1.133 0.720
2ed3 SAHDiphthine synthase / 0.705
2zvc SAHPrecorrin-3 C17-methyltransferase / 0.689
1jgt APCCarboxyethyl-arginine beta-lactam-synthase 6.3.3.4 0.687
1cbf SAHCobalt-precorrin-4 C(11)-methyltransferase 2.1.1.271 0.685
3s3t ATPUniversal stress protein / 0.685
5a7y SAHtRNA (adenine(9)-N1)-methyltransferase 2.1.1.218 0.672
4rr8 A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.669
1s4d SAHUroporphyrinogen-III C-methyltransferase 2.1.1.107 0.667
4oa9 ANPProtein BRASSINOSTEROID INSENSITIVE 1 2.7.10.1 0.664
3nut SAHPrecorrin-3 methylase / 0.662
4jl8 ADPAdenylate kinase / 0.654
2bb3 SAHCobalamin biosynthesis precorrin-6Y methylase (CbiE) / 0.652