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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2e0i FAD DNA photolyase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2e0i FADDNA photolyase / 1.476
1qnf HDFDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.744
2gv8 FADThiol-specific monooxygenase 1.14.13 0.679
5i39 FADL-amino acid deaminase / 0.670
1ryi FADGlycine oxidase 1.4.3.19 0.665
2j08 IRFDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.665
4kx6 FADFumarate reductase flavoprotein subunit 1.3.5.4 0.662
2ign FADPyranose 2-oxidase / 0.657
3uoz FAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase 1.14.13.160 0.656
4c3y FAD3-ketosteroid dehydrogenase / 0.654
4r38 RBFBlue-light-activated histidine kinase 2 2.7.13.3 0.654
2o12 FMNChorismate synthase / 0.653
4hj6 FMNLOV protein / 0.651
4wuj FMNGlycoside hydrolase family 15, cellulose signaling associated protein envoy / 0.650