Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2dxx SAH Diphthine synthase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2dxx SAHDiphthine synthase / 1.105
2e4n SAHDiphthine synthase / 1.101
2ek7 SAHDiphthine synthase / 1.100
2p9d SAHDiphthine synthase / 1.100
2ele SAHDiphthine synthase / 1.099
2eni SAHDiphthine synthase / 1.098
2p6k SAHDiphthine synthase / 1.098
2p6l SAHDiphthine synthase / 1.098
2en5 SAHDiphthine synthase / 1.097
2pcm SAHDiphthine synthase / 1.097
2eh4 SAHDiphthine synthase / 1.096
2e8s SAHDiphthine synthase / 1.095
2ek3 SAHDiphthine synthase / 1.095
2ek4 SAHDiphthine synthase / 1.095
2emr SAHDiphthine synthase / 1.095
2pb5 SAHDiphthine synthase / 1.095
2pcg SAHDiphthine synthase / 1.095
2e8r SAHDiphthine synthase / 1.094
2el3 SAHDiphthine synthase / 1.094
2eh5 SAHDiphthine synthase / 1.093
2eka SAHDiphthine synthase / 1.093
2pb6 SAHDiphthine synthase / 1.091
2dxw SAHDiphthine synthase / 1.085
2e08 SAHDiphthine synthase / 1.083
2eh2 SAHDiphthine synthase / 1.083
2owk SAHDiphthine synthase / 1.083
2e17 SAHDiphthine synthase / 1.082
2pck SAHDiphthine synthase / 1.081
2p6i SAHDiphthine synthase / 1.080
2ed5 SAHDiphthine synthase / 1.079
2dv3 SAHDiphthine synthase / 1.077
2pca SAHDiphthine synthase / 1.077
2eld SAHDiphthine synthase / 1.076
2p5f SAHDiphthine synthase / 1.076
2ejk SAHDiphthine synthase / 1.075
2ek2 SAHDiphthine synthase / 1.075
2dv5 SAHDiphthine synthase / 1.073
2p6d SAHDiphthine synthase / 1.073
2pci SAHDiphthine synthase / 1.072
2pb4 SAHDiphthine synthase / 1.070
2owg SAHDiphthine synthase / 1.069
2dxv SAHDiphthine synthase / 1.066
2e07 SAHDiphthine synthase / 1.066
2e7r SAHDiphthine synthase / 1.066
2ehl SAHDiphthine synthase / 1.066
2egb SAHDiphthine synthase / 1.065
2egl SAHDiphthine synthase / 1.065
2e15 SAHDiphthine synthase / 1.064
2z6r SAHDiphthine synthase / 1.064
2dsg SAHDiphthine synthase / 1.063
2dsh SAHDiphthine synthase / 1.062
2dv7 SAHDiphthine synthase / 1.062
2ejj SAHDiphthine synthase / 1.062
2emu SAHDiphthine synthase / 1.062
2e16 SAHDiphthine synthase / 1.061
2pch SAHDiphthine synthase / 1.061
2dek SAHDiphthine synthase / 1.060
2egs SAHDiphthine synthase / 1.060
2dv4 SAHDiphthine synthase / 1.059
2hut SAHDiphthine synthase / 1.059
2el0 SAHDiphthine synthase / 1.058
2owu SAHDiphthine synthase / 1.058
1wng SAHDiphthine synthase / 1.056
2e8h SAHDiphthine synthase / 1.055
2eeq SAHDiphthine synthase / 1.054
2huq SAHDiphthine synthase / 1.054
2huv SAHDiphthine synthase / 1.054
2owv SAHDiphthine synthase / 1.052
2dsi SAHDiphthine synthase / 1.038
2p5c SAHDiphthine synthase / 1.037
1vce SAHDiphthine synthase / 1.034
2p2x SAHDiphthine synthase / 1.032
2e8q SAHDiphthine synthase / 1.027
2hux SAHDiphthine synthase / 0.927
2hr8 SAHDiphthine synthase / 0.904
2ejz SAHDiphthine synthase / 0.821
2ed3 SAHDiphthine synthase / 0.722
2owf SAHDiphthine synthase / 0.709
2egv SAMRibosomal RNA small subunit methyltransferase E 2.1.1.193 0.708
1jgt APCCarboxyethyl-arginine beta-lactam-synthase 6.3.3.4 0.691
1cbf SAHCobalt-precorrin-4 C(11)-methyltransferase 2.1.1.271 0.684
3s3t ATPUniversal stress protein / 0.683
5a7y SAHtRNA (adenine(9)-N1)-methyltransferase 2.1.1.218 0.679
2egw SAHRibosomal RNA small subunit methyltransferase E 2.1.1.193 0.671
2zvb SAHPrecorrin-3 C17-methyltransferase / 0.671
4ii5 ADPCyclin-dependent kinase 2 2.7.11.22 0.667
4oa9 ANPProtein BRASSINOSTEROID INSENSITIVE 1 2.7.10.1 0.664
2zvc SAHPrecorrin-3 C17-methyltransferase / 0.663
2qbu SAHPrecorrin-2 methyltransferase / 0.657
4jl8 ADPAdenylate kinase / 0.656
3ndc SAHPrecorrin-4 C(11)-methyltransferase 2.1.1.133 0.655
1mbz IOTCarboxyethyl-arginine beta-lactam-synthase 6.3.3.4 0.651