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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2dxw SAH Diphthine synthase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2dxw SAHDiphthine synthase / 1.105
2owk SAHDiphthine synthase / 1.097
2e7r SAHDiphthine synthase / 1.086
2dxx SAHDiphthine synthase / 1.085
2e07 SAHDiphthine synthase / 1.085
2egb SAHDiphthine synthase / 1.084
2ehl SAHDiphthine synthase / 1.084
2z6r SAHDiphthine synthase / 1.084
2e15 SAHDiphthine synthase / 1.083
2egl SAHDiphthine synthase / 1.083
2e08 SAHDiphthine synthase / 1.082
2e17 SAHDiphthine synthase / 1.082
2e4n SAHDiphthine synthase / 1.082
2ek7 SAHDiphthine synthase / 1.081
2ele SAHDiphthine synthase / 1.081
2p9d SAHDiphthine synthase / 1.081
2p6k SAHDiphthine synthase / 1.080
2dek SAHDiphthine synthase / 1.079
2eni SAHDiphthine synthase / 1.079
2p6i SAHDiphthine synthase / 1.079
2p6l SAHDiphthine synthase / 1.079
2en5 SAHDiphthine synthase / 1.078
2pcm SAHDiphthine synthase / 1.078
2dv3 SAHDiphthine synthase / 1.077
2eh4 SAHDiphthine synthase / 1.077
2el0 SAHDiphthine synthase / 1.077
2pck SAHDiphthine synthase / 1.077
2e8s SAHDiphthine synthase / 1.076
2ek3 SAHDiphthine synthase / 1.076
2ek4 SAHDiphthine synthase / 1.076
2emr SAHDiphthine synthase / 1.076
2pb5 SAHDiphthine synthase / 1.076
2pcg SAHDiphthine synthase / 1.076
2e8r SAHDiphthine synthase / 1.075
2eka SAHDiphthine synthase / 1.074
2el3 SAHDiphthine synthase / 1.074
2dv5 SAHDiphthine synthase / 1.073
2huq SAHDiphthine synthase / 1.073
2owu SAHDiphthine synthase / 1.073
2pb6 SAHDiphthine synthase / 1.072
2p6d SAHDiphthine synthase / 1.069
2dxv SAHDiphthine synthase / 1.066
2eh2 SAHDiphthine synthase / 1.064
2dsg SAHDiphthine synthase / 1.063
2dsh SAHDiphthine synthase / 1.063
2dv7 SAHDiphthine synthase / 1.063
2e16 SAHDiphthine synthase / 1.062
2ejj SAHDiphthine synthase / 1.062
2ed5 SAHDiphthine synthase / 1.060
2egs SAHDiphthine synthase / 1.060
2eh5 SAHDiphthine synthase / 1.060
2dv4 SAHDiphthine synthase / 1.059
2pca SAHDiphthine synthase / 1.058
2eld SAHDiphthine synthase / 1.057
2p5f SAHDiphthine synthase / 1.057
1wng SAHDiphthine synthase / 1.056
2ejk SAHDiphthine synthase / 1.056
2ek2 SAHDiphthine synthase / 1.056
2huv SAHDiphthine synthase / 1.055
2eeq SAHDiphthine synthase / 1.054
2owg SAHDiphthine synthase / 1.054
2hut SAHDiphthine synthase / 1.044
2emu SAHDiphthine synthase / 1.043
2pch SAHDiphthine synthase / 1.042
2pb4 SAHDiphthine synthase / 1.037
2e8h SAHDiphthine synthase / 1.036
2owv SAHDiphthine synthase / 1.036
1vce SAHDiphthine synthase / 1.034
2p5c SAHDiphthine synthase / 1.033
2p2x SAHDiphthine synthase / 1.032
2e8q SAHDiphthine synthase / 1.027
2pci SAHDiphthine synthase / 1.024
2dsi SAHDiphthine synthase / 1.023
2hux SAHDiphthine synthase / 0.927
2hr8 SAHDiphthine synthase / 0.880
2ejz SAHDiphthine synthase / 0.735
2owf SAHDiphthine synthase / 0.735
2ed3 SAHDiphthine synthase / 0.705
2egv SAMRibosomal RNA small subunit methyltransferase E 2.1.1.193 0.704
2e0n SAHPrecorrin-2 C20-methyltransferase / 0.701
1cbf SAHCobalt-precorrin-4 C(11)-methyltransferase 2.1.1.271 0.690
1jgt APCCarboxyethyl-arginine beta-lactam-synthase 6.3.3.4 0.687
3s3t ATPUniversal stress protein / 0.684
5a7y SAHtRNA (adenine(9)-N1)-methyltransferase 2.1.1.218 0.672
1kp2 ATPArgininosuccinate synthase 6.3.4.5 0.669
2zvc SAHPrecorrin-3 C17-methyltransferase / 0.668
1i44 ACPInsulin receptor 2.7.10.1 0.666
2zvb SAHPrecorrin-3 C17-methyltransferase / 0.665
4jal SAHtRNA (cytidine(34)-2'-O)-methyltransferase / 0.659
4oav ACP2-5A-dependent ribonuclease 3.1.26 0.658
2qbu SAHPrecorrin-2 methyltransferase / 0.656
3ndc SAHPrecorrin-4 C(11)-methyltransferase 2.1.1.133 0.656
4ii5 ADPCyclin-dependent kinase 2 2.7.11.22 0.654
4jl8 ADPAdenylate kinase / 0.654
1mbz IOTCarboxyethyl-arginine beta-lactam-synthase 6.3.3.4 0.652
4rr8 A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.652
1mp8 ADPFocal adhesion kinase 1 2.7.10.2 0.650